Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C19
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    33   0.21 
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    30   2.0  
02_05_0234 + 27062945-27063281,27064273-27064568,27064928-270650...    30   2.6  
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847...    29   3.4  
04_04_0778 + 28019924-28020553,28020657-28020797,28021359-28021454     29   6.0  
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018...    28   7.9  

>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 269 IDEMGSRVDELEKNITDLMTQAGVE 343
           +DEMG+++DELE+++ DL  + G +
Sbjct: 594 LDEMGTKIDELEQSVNDLKAEMGTD 618


>01_06_0124 -
           26692731-26697046,26698749-26698827,26698899-26698955,
           26699321-26699416
          Length = 1515

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/79 (26%), Positives = 41/79 (51%)
 Frame = +2

Query: 110 EPNSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSR 289
           E + +N+  + E E    +   KN +++ + V S LQN     Q   ++ +    E+G++
Sbjct: 480 EASFENLGNDLEQELERISIMHKNNEDL-ELVNSNLQNDLATVQGQKNEAVASTLELGNK 538

Query: 290 VDELEKNITDLMTQAGVEN 346
           ++E  + I++L  Q  VEN
Sbjct: 539 LEEKNQQISNL--QEAVEN 555



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/79 (25%), Positives = 40/79 (50%)
 Frame = +2

Query: 110 EPNSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSR 289
           E +  N+  + E ++   +   KN +E+ +   S LQN     Q   ++ +    E+G++
Sbjct: 739 EASFKNLGNDLEQKFEQISVMQKNNEEL-ELANSNLQNELAMVQEQKNEAVASTVELGNK 797

Query: 290 VDELEKNITDLMTQAGVEN 346
           ++E  + I++L  Q  VEN
Sbjct: 798 LEEQNQQISNL--QEAVEN 814


>02_05_0234 +
           27062945-27063281,27064273-27064568,27064928-27065068,
           27065556-27065644,27067444-27067516
          Length = 311

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 511 ITISPNKTTSSKEFEIGISN*IISFESFQLFSLVYCIYKLKSAIFNNLVTFQPSTS-NLK 687
           +T+     +SSK   +GI     SF    +F+LVYC   +     N  VTF    +  L 
Sbjct: 73  LTVMGVSKSSSKCATVGIQGIAWSFGGM-IFALVYCTAGISGGHINPAVTFGLFLARKLS 131

Query: 688 FSFMITVILLQCI 726
            +  I  I++QC+
Sbjct: 132 LTRAIFYIVMQCL 144


>01_05_0592 -
           23483834-23484285,23484357-23484455,23484534-23484702,
           23485049-23485363,23485561-23485767,23485852-23486106,
           23486575-23486736
          Length = 552

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
 Frame = +2

Query: 119 SDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQD---KFQSMSDQIINRIDEMGSR 289
           S    K TE E    A + K+  E+T+   S L++++D   K Q+  D ++N+I ++   
Sbjct: 367 SSKAAKITELEKRIKALE-KDKGELTKKRDSALKDVEDRKIKSQAQFDVLVNKIKKLEGA 425

Query: 290 VDELEKNITDLMTQAGVENEK*K*FSSINLR*NIIPR*SVWINN 421
            DE+    T L+      N     F+++ +   +I   +V   N
Sbjct: 426 RDEVANAATPLIQAMFFNNNGPSSFNAVEIFDKLITAPNVCFKN 469


>04_04_0778 + 28019924-28020553,28020657-28020797,28021359-28021454
          Length = 288

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 511 ITISPNKTTSSKEFEIGISN*IISFESFQLFSLVYCIYKLKSAIFNNLVTFQPSTS-NLK 687
           +T+     ++SK   +GI     SF    +F+LVYC   +  A  N  VTF    +  L 
Sbjct: 72  LTVMGVNNSTSKCATVGIQGIAWSFGGM-IFALVYCTAGISGAHINPAVTFGLFLARKLS 130

Query: 688 FSFMITVILLQCI 726
            +  +  +++QC+
Sbjct: 131 LTRALFYMVMQCL 143


>09_04_0338 -
           16801189-16801524,16801605-16801679,16801758-16801831,
           16801972-16802059,16802185-16802336,16802423-16802582,
           16802913-16803128,16803487-16803744,16804202-16804231,
           16804738-16804941,16805790-16805855
          Length = 552

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 161 PASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEK 307
           P+     +++ T    S L+ + +   ++  +  +RID+MG+ V+ L K
Sbjct: 220 PSLHQNGLEQSTNISNSTLEGLANTISNLKAEQRSRIDKMGAEVERLTK 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,099,763
Number of Sequences: 37544
Number of extensions: 355267
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)