Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C16
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    26   0.34 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   4.2  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   4.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.7  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
 Frame = +2

Query: 482 CWTRTERTPP------QPAPSRSTDG-WQPPTSIYSAPY 577
           CW+ T   PP      QP PS+S +  +QP T++ +  Y
Sbjct: 323 CWSLTSSPPPPYQISAQPTPSQSPNQIYQPVTNLTNLTY 361



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/33 (24%), Positives = 13/33 (39%)
 Frame = +2

Query: 476 SRCWTRTERTPPQPAPSRSTDGWQPPTSIYSAP 574
           +R   +  R  P P     +    PP  +Y+ P
Sbjct: 256 TRTTLKNNRASPYPMQRPKSASLSPPPHVYNPP 288


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 455 GCSGRGSSRCWTRTERTPPQPAPS 526
           G    GSSR      ++ P+PAP+
Sbjct: 240 GLQSSGSSRSHQPATKSKPRPAPA 263


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 206 APEDSMQVLMRFSSLSSALRAKGR 135
           A ED +  +     L SAL AKG+
Sbjct: 151 ADEDKVNFVTLLGELKSALNAKGK 174


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 527 WRAQAEEACAPY 492
           WR   E AC PY
Sbjct: 514 WRETGEAACDPY 525


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 439 LRPKHGLLRAREF 477
           LRP  GLL AR+F
Sbjct: 317 LRPAAGLLTARDF 329


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 227 LSRQRGCGRRLAAWRMLLQSY*PWKIDTTK 316
           LSR R    RL  W ++L  Y  ++I+  K
Sbjct: 680 LSRCRLLSERLTRWTLILGQY-DYEIELVK 708


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 479 RCWTRTERTPPQPAPSRSTDGWQPPTSIYSAPYT*KCTKSKLRRAI 616
           R +T  ++T P+     +  GW    S YSA    K  +    R++
Sbjct: 83  RNFTNLKKTHPKVKLQVAVGGWAEGGSKYSAMVAEKSRRDAFIRSV 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,950
Number of Sequences: 336
Number of extensions: 3383
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)