Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_C16
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 155 4e-39
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 33 0.040
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 31 0.12
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 30 0.28
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 29 0.49
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 2.0
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.6
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 27 2.6
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 3.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 4.5
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 4.5
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 26 6.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 6.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.9
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 25 7.9
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 155 bits (377), Expect = 4e-39
Identities = 80/210 (38%), Positives = 120/210 (57%)
Frame = +1
Query: 73 SQKLLLXCGLVRPTTSGFFTLLPLARRALDKLENLIKTCIESSGAQRLSLPALTSAGLWA 252
+ +LL+ G ++P+ G F LPL R +K+ +L+ + S GA +SL L+S +W
Sbjct: 27 ANQLLIDMGFIQPSMPGIFQYLPLGLRVQNKICDLLHISMRSLGASAISLAHLSSKEIWE 86
Query: 253 KTGRXXXXXXXXXXXXDRHNKKYLLAPTYEEAIAELLSDLKPISYKQLPIILYQISNKYR 432
K+GR DR++++ LAPT+EE + ++ + S KQLPI +YQI K+R
Sbjct: 87 KSGRWQKTGSELFRLHDRNDREMCLAPTHEEDVTRTMATIID-SQKQLPIRVYQIGRKFR 145
Query: 433 DELRPKHGLLRAREFSMLDAYGAHASSACALQVYGRMATAYEHLFRALHLKVHKVEAPSG 612
DELRP+ GLLR REF M D Y A A++ Y + AY F+ + L V+A +G
Sbjct: 146 DELRPRGGLLRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFVMVKAATG 205
Query: 613 DMGGSFSHEWQLAATSGEDXIKVCPSCSHA 702
++GG+ SHE+ GED I CPSC ++
Sbjct: 206 NIGGNLSHEFHYRHPVGEDVIYTCPSCHYS 235
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 33.1 bits (72), Expect = 0.040
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 4/159 (2%)
Frame = +1
Query: 190 IESSGAQRLSLPALTSAGLWAKTGRXXXXXXXXXXXXDRHNKKYLLAPTYEEAIAELLSD 369
+E G L P + + + AKT + D ++YL+A + + A +
Sbjct: 191 LEKRGYIALQAPTMLNKDVMAKTAQLEQFDEELYKVIDGDEERYLIATSEQPISAYHSGE 250
Query: 370 LKPISYKQLPIILYQISNKYRDEL----RPKHGLLRAREFSMLDAYGAHASSACALQVYG 537
+QLP+ S YR E R G+ R F ++ + + + +
Sbjct: 251 WFEKPSEQLPLKYAGYSTCYRREAGSHGRDAWGIFRVHAFEKIEQF-VLTDPEKSWEAFT 309
Query: 538 RMATAYEHLFRALHLKVHKVEAPSGDMGGSFSHEWQLAA 654
M E +++L L V SG + + + ++ L A
Sbjct: 310 EMINHAEDFYKSLELPYRIVAIVSGALNNAAAKKYDLEA 348
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 391 QLPIILYQISNKYRDELRPKHGLLRAREFSMLD 489
++P + +R+E+ P+ GLLR REF M +
Sbjct: 240 KVPFASAMVGKAFRNEISPRSGLLRVREFLMAE 272
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 30.3 bits (65), Expect = 0.28
Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 11/173 (6%)
Frame = +1
Query: 10 FQPVITIPKHAKLKHTEITCKSQKLLLXCGLVRPT---TSGFFTLLPLARRALDKLENLI 180
F P K LK E T + + + T T G LP R ++L + +
Sbjct: 26 FGPTPFSTKANNLKQPESTLNDHRTIAARQKLYTTSILTPGSIFFLPHGTRIYNRLVDFL 85
Query: 181 KTCIESSGAQRLSLPALTSAGLWAKTG------RXXXXXXXXXXXXDRH-NKKYLLAPTY 339
+ + G + + P + LW K+G + D H N Y L P
Sbjct: 86 RAQYQIHGFEEIITPLIFKKDLWEKSGHWQNYEKEIFRVEESRNVEDEHSNATYGLKPMN 145
Query: 340 EEAIAELLSDLKPISYKQLPIILYQISNKYRDELR-PKHGLLRAREFSMLDAY 495
+ + + SYK+LP+ S +R+E GL R R F D +
Sbjct: 146 CPGHCIVYASTER-SYKELPLRFADFSPLHRNEASGALSGLTRLRCFHQDDGH 197
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 29.5 bits (63), Expect = 0.49
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 382 SYKQLPIILYQISNKYRDELRPKHGLLRAREFSMLDAYGAHASSACALQVYGRMATAYEH 561
S++ LP+ L Q ++ R E + LR REF + + AH + A + ++ Y
Sbjct: 327 SHRDLPLKLNQWNSVVRWEFKNPQPFLRTREFLWQEGHTAHMTLEGATEEVHQILDLYAR 386
Query: 562 LFRAL 576
++ L
Sbjct: 387 IYTDL 391
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 329 ANRYFLLCLSSRVNSSAAAFSRRPVFAHSPADVRAGNDNLCAPEDSMQVLMRFSSLSSAL 150
AN +S + SA+ S +P + D++ N NLCAPE S R S S+
Sbjct: 430 ANPLLQTDISITYSQSASPVSGQPAMNENSYDLQ--NANLCAPEMSPTYTARHRSNSAGS 487
Query: 149 R 147
R
Sbjct: 488 R 488
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 494 TERTPPQPAPSRSTDGWQPPTSIYSAPYT 580
T R P +P P RST QPP+S AP T
Sbjct: 54 TRRLPRKPLPFRST-SLQPPSSQPPAPPT 81
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 275 LLQSY*PWKIDTTKNICWLRHTKRQSRSYCQTSSRSHTSNYRLYYIRLAIN 427
+L+SY K +T C L+H C SS ++ Y LYY IN
Sbjct: 139 ILRSYEVKKRVSTLLQCCLKHYDLCIPVICTLSSNPKSAKYLLYYTSFIIN 189
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 371 RSDNNSAIASSYVG--ANRYFLLCLSSRVNSSAAAFS 267
R+D N + +YV ANR +LCL S + ++A F+
Sbjct: 206 RTDGNGSSCCAYVASIANRRLVLCLLSSLINTAMRFN 242
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 254 RLAAWRMLLQSY*PWKIDTTKNICWLRHTKRQSRS 358
+L RM L P +T++NI WL+H+ R S +
Sbjct: 572 QLKTARMKLADKYPQGDNTSENIDWLKHSLRDSNT 606
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 302 IDTTKNICWLRHTKRQSRSYCQTSSRSHTSNYRLYYIRLAINTGTNCGRNTGC 460
+DT + + WL ++RS T++ H+S ++ L +N G+N C
Sbjct: 653 LDTPEQVTWLLDQASKNRSVAATNANEHSSRSHSVFM-LHLN-GSNSTTGETC 703
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 416 LAINTGTNCGRNTGCSGRGSSRCWTRTERTPPQPAPSR 529
LA + N ++ R +SR R + PP+ APS+
Sbjct: 180 LASSNNKNHNQSKNPQNRSNSRSKQRNKNAPPKSAPSK 217
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 331 PTYEEAIAELLSDLKPISYKQLP 399
P Y EAI + L+P Y+QLP
Sbjct: 98 PHYAEAIVPIQQVLQPQQYRQLP 120
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 370 LKPISYKQLPIILYQISNKYR 432
L P+ + P++L+QI +KY+
Sbjct: 1134 LSPVDFANNPLLLFQIISKYK 1154
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 266 RRPVFAHSPADVRAGNDNLCAPEDSMQVLMRFSSLSSA 153
RR V +SPA +R GN +L + +++ + +LSS+
Sbjct: 43 RRLVDDNSPATIRVGNVSLLLSKSNIRRRIALQALSSS 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,969
Number of Sequences: 5004
Number of extensions: 54657
Number of successful extensions: 178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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