Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C16
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1412 + 26893221-26893613,26894205-26894587,26894697-268948...    38   0.006
04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742...    38   0.008
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264...    33   0.17 
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351...    33   0.29 
04_04_0588 - 26412487-26413887                                         30   2.0  
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519...    29   2.7  
05_07_0226 - 28515052-28515064,28515426-28515502,28515610-285157...    29   2.7  
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516...    29   3.6  
11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239     28   6.2  
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           28   6.2  
07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213           28   6.2  
06_01_0561 - 3983308-3983564,3983652-3983775                           28   6.2  
05_07_0183 + 28251548-28252009,28252172-28252594                       28   6.2  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   6.2  
04_04_0534 + 26071227-26071811                                         28   6.2  
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178...    28   6.2  
03_01_0193 + 1541884-1543064,1543153-1544647                           28   6.2  
11_01_0159 - 1318825-1319618,1319722-1319854                           28   8.3  
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           28   8.3  
01_05_0109 + 18201344-18202811,18203234-18203883                       28   8.3  

>08_02_1412 +
           26893221-26893613,26894205-26894587,26894697-26894814,
           26894998-26895192,26895318-26895542,26895773-26895832,
           26895956-26896036,26896142-26896547,26896730-26896965
          Length = 698

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 325 LAPTYEEAIAELLSDLKPISYKQLPIILYQISNKYRDELRPKHGLLRAREFSMLD 489
           + P   + I     DL   + ++LP    QI   +R+E+ P+ GLLR REF++ +
Sbjct: 261 MRPETAQGIFVNFKDLYYYNGQKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAE 315


>04_03_0781 +
           19572795-19573540,19573906-19573956,19574179-19574251,
           19574772-19574876
          Length = 324

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 338 TKRQSRSYCQTSSRSHTSNYRLYYIRLAINTGTNCGRNTGCSGRGSSRCWTRTERTPPQP 517
           T R  R   Q     H +++  ++  +A  +G++ G ++  +G G +R W R    P  P
Sbjct: 43  TTRNQRLQLQLGGDGHHNHHHHHHQEVAGTSGSSSGGSSSNNGGGGTRDWLRLATGPASP 102

Query: 518 APSRSTDGWQPPTSIYSAP 574
             S  +D    P++  +AP
Sbjct: 103 GASAGSDHDLFPSTTTTAP 121


>06_01_0368 +
           2645007-2645317,2645422-2645509,2648927-2649183,
           2649453-2649504,2649527-2649838
          Length = 339

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 435 RIAAETRAAQGEGVLDAGRVRSARLLSLRPPGLRTDGNRLRASIPRPTLESAQSRSSVGR 614
           RI    R+  G     A  V  A +   RPP  R  G R  A +PRPT  S +  S  G 
Sbjct: 168 RIVDSARSVLGLLTCRADDVAQADVAPQRPP--RPTGPRPAAHVPRPTPPSPRKVSVSGS 225

Query: 615 Y-GRKLLTRVAARGDLWRRP 671
           Y G  L   +AA G   R P
Sbjct: 226 YVGLALYVVLAAAGTSSRGP 245


>07_01_0465 +
           3513296-3513631,3514386-3514442,3515196-3515306,
           3515466-3515552,3515627-3515740,3515850-3516056,
           3516291-3516428,3516691-3516852,3516939-3517138,
           3517429-3517554,3517644-3517785
          Length = 559

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +1

Query: 313 KKYLLAPTYEEAIAELLSDLKPISYKQLPIILYQISNKYRDELRPKHGLLRAREFSMLDA 492
           +K ++ PT E  +  + +     SY+ LP+++ Q +N  R E+R K   +R  EF   + 
Sbjct: 165 EKLVVRPTSETIVNHMFTKWIQ-SYRDLPLMINQWANVTRWEMRTK-PFIRTLEFLWQEG 222

Query: 493 YGAHAS 510
           + AHA+
Sbjct: 223 HTAHAT 228


>04_04_0588 - 26412487-26413887
          Length = 466

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 686 GHTFXWSSPEVAASCHSCEKLPPISPDGAST 594
           G T   SS   AASC S    PP +PD A+T
Sbjct: 284 GRTSVSSSAAAAASCSSSSLSPPETPDDANT 314


>10_08_0570 +
           18851451-18851723,18851894-18851928,18851929-18851998,
           18852089-18852187,18852276-18852365,18852430-18852920,
           18853015-18853102,18853204-18853245,18853548-18853574,
           18853817-18853996,18854249-18854416,18854501-18854710
          Length = 590

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 440 CGRNTGCSGRGSSRCWTRTERTPPQP 517
           CGR+ G    GSSR W R  R   +P
Sbjct: 30  CGRSYGRGSGGSSRSWERERRRQSEP 55


>05_07_0226 -
           28515052-28515064,28515426-28515502,28515610-28515767,
           28515852-28515937,28516048-28516351,28516410-28517490
          Length = 572

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 442 RPKHGLLRAREFSMLDAYGAHASSACALQVYGRMATAYEHLFRALHLKVHKVEAPSGDMG 621
           +P +  LRA  F   D +  H+SS    Q   R ++  EH   A   +     AP+ D+ 
Sbjct: 262 QPPNSALRASSFGAADLFSLHSSSR---QHTPRPSSFDEH--AAARARASATVAPTNDLK 316

Query: 622 GSFSHEWQLAATSGED 669
            +   EW   A++  +
Sbjct: 317 DTHMIEWSSGASAASE 332


>08_02_1050 +
           23949828-23949981,23950083-23950534,23951599-23951631,
           23952069-23952179,23953175-23953348
          Length = 307

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +3

Query: 432 GRIAAETRAAQGEGVLDAGRVRSARLLSLRPPGLRTDGNRLRASIPRPTLESAQSRSSVG 611
           GR  A   AA     LDA  + +A LL L PP + +     R   P PT   A +   VG
Sbjct: 52  GRGGASAAAAPTSSALDA-LLSAAELLCLAPPAICSVVCAARLVFPPPTTTGAPASGLVG 110


>11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239
          Length = 126

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 410 IRLAINTGTNCGRNTGCSGRGSSRCWTRTERTPPQPA 520
           +R A   G   GR  GCSG    R      R P +PA
Sbjct: 6   VRAAAAAGGGVGRRAGCSGGVGRRAGGGVARRPRRPA 42


>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 443 GRNTGCSGRGSSRCWTRTERTPPQPAPS 526
           GR +G     S R W R+ R  P P PS
Sbjct: 495 GRGSGTGMWVSGRAWNRSARARPDPLPS 522


>07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213
          Length = 343

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 455 GCSGRGSSRCWTRTE-RTPPQPAPSRSTDGWQPPTSIYSA 571
           G +G+G+   W   E R PP PA   +     PP S+  A
Sbjct: 145 GSAGKGTKTDWMMHEFRLPPPPADDLAAGRSSPPPSLQEA 184


>06_01_0561 - 3983308-3983564,3983652-3983775
          Length = 126

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = +3

Query: 432 GRIAAETRAAQGEGVLDAGRVRSARLLSLRPPGLRTDGNRLRASIPRPTLESAQSRSSVG 611
           G +AA+T    GE       +R   L    PP    DG     S P P  +  Q  SS G
Sbjct: 58  GVVAADTGGGGGEKAAQRRSLRRVGLHRTPPPPTSNDGGIESISPPPPPEQDGQFFSSTG 117


>05_07_0183 + 28251548-28252009,28252172-28252594
          Length = 294

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 524 RAQAEEACAPYASSIENSLALSSPCF 447
           R  A E C   ASS++ S+ L++ CF
Sbjct: 37  RVAARELCRALASSVDRSIRLAASCF 62


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 438 IAAETRAAQG---EGVLDAGRVRSARLLSL-RPPGLRTDGNRLRASIPRPTLES 587
           +AA  +AA G   +G +       +R+ S+ RP GL +    LR ++PRP   S
Sbjct: 510 LAALLKAATGASADGNVTVSSQDGSRIFSMDRPAGLGSSAPSLRPTVPRPVARS 563


>04_04_0534 + 26071227-26071811
          Length = 194

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 440 CGRNTGCSGRGSSRCWTRTERTPPQPAPSRST 535
           CGR  G     S R W  + R  P P PS  T
Sbjct: 154 CGRGLGTGTWISGRAWFCSTRARPDPLPSLDT 185


>04_04_0524 -
           25916869-25916876,25917352-25917506,25917712-25917841,
           25918013-25918094,25918180-25918213,25918271-25918327,
           25918686-25918791,25920755-25920881
          Length = 232

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 NLRTSLKPA*NLLERKDCHCRLSRQRG 244
           NL+T L+    L++ +  HC+LS QRG
Sbjct: 79  NLKTILQGGNYLVQGRKLHCKLSNQRG 105


>03_01_0193 + 1541884-1543064,1543153-1544647
          Length = 891

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 218 DNLCAPEDSMQVLMRFSSLSSALRAKGRRVKKPDVVGRTKPHXSN--SF*LLHVISVCF 48
           D LCAP +   + +R +SLS A+  K    +  D++     H +    F LL ++++ +
Sbjct: 214 DQLCAPPEISYISVRSNSLSGAIAGKLNACRSIDLLDVGSNHFAGPAPFGLLGLVNITY 272


>11_01_0159 - 1318825-1319618,1319722-1319854
          Length = 308

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 305 LSSRVNSSAAAFSRRPVFAHSPADVRAGNDNLCAPEDSMQV 183
           L++  NS++AA +R P+FA +     AG+  + +  D  Q+
Sbjct: 116 LAAAANSTSAASNRHPIFADATFPSAAGSHTVSSNSDVNQM 156


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 368 SDNN-SAIASSYVGANRYFLLCLSSRVNSSAAAFSRRPVFAHSPADVRAGNDNLCAPEDS 192
           SDNN S    +++G  R  L  L+   N       R  VF ++ A   AGND+LC     
Sbjct: 695 SDNNLSGGIPAFLGGMRG-LSILNLSYNKFEGEVPRDGVFLNATATFLAGNDDLCGGIPE 753

Query: 191 MQV 183
           M++
Sbjct: 754 MKL 756


>01_05_0109 + 18201344-18202811,18203234-18203883
          Length = 705

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 513 SLRPPGLRTDGNRLRASIPRPTLESAQSRSSVGRYGRKLLTRVAAR-GDL 659
           SLR   LR+  NRL   +P P L +A    SV  YG +L   +    GDL
Sbjct: 94  SLRHLNLRS--NRLFGELPAPLLSAAAGLQSVVLYGNELYGPIPPELGDL 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,693,057
Number of Sequences: 37544
Number of extensions: 438851
Number of successful extensions: 2006
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)