Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C15
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0148 - 15741241-15741376,15742155-15742237,15742313-157423...    28   2.1  
01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185...    27   4.8  

>02_03_0148 -
          15741241-15741376,15742155-15742237,15742313-15742394,
          15742514-15742578,15742667-15742792,15743138-15743188
          Length = 180

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 3  LVLYNFLPLTVHTKVRLNILVKHTLCVFLNY 95
          L++  +  L +H  + L+IL+   LC+++NY
Sbjct: 4  LMMPRYFILIIHEDLALSILLAGILCIYINY 34


>01_01_0217 +
           1848970-1849251,1849419-1849566,1849638-1849789,
           1850146-1850328,1850690-1850765,1850956-1851033,
           1851584-1851669,1852680-1852753,1852920-1852965,
           1853211-1853320,1853600-1853774,1854501-1854749
          Length = 552

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +3

Query: 12  YNFLPLTVHTKV----RLNILVKHTLCVFLNY 95
           YNFL ++ H  +    R+N+  KH LC +L +
Sbjct: 382 YNFLDMSPHVLIPMHGRINLWPKHMLCGYLRH 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,054,536
Number of Sequences: 37544
Number of extensions: 65220
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)