Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C15
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   0.67 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   8.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   8.3  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 112 KYVYNDKNTKKHY*YFIIN 168
           KY YN+ N K +Y  +IIN
Sbjct: 330 KYNYNNYNKKLYYKNYIIN 348


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 6   VLYNFLPLTVHTKVRLNILVKHTLCVFL 89
           VL  +LP     KV L I +  +L VFL
Sbjct: 252 VLVFYLPAEAGEKVTLGISILLSLVVFL 279


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 159 YNKLFKVHPGVIIN 200
           YN  +  HPG I+N
Sbjct: 142 YNNYYIWHPGKIVN 155


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 159 YNKLFKVHPGVIIN 200
           YN  +  HPG I+N
Sbjct: 142 YNNYYIWHPGKIVN 155


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 121 YNDKNTKKHY*YFIIN 168
           YN+ N K +Y  +IIN
Sbjct: 97  YNNYNKKLYYKNYIIN 112


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 121 YNDKNTKKHY*YFIIN 168
           YN+ N K +Y  +IIN
Sbjct: 338 YNNYNKKLYYKNYIIN 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,355
Number of Sequences: 438
Number of extensions: 1189
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)