Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_C14
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792... 32 0.40
01_06_0784 + 31979670-31979976,31980092-31980337,31980428-319805... 31 1.2
03_01_0367 + 2852287-2852603,2853202-2853278,2853388-2853431,285... 30 2.1
06_03_0592 + 22585546-22588573,22588680-22589032 29 2.8
11_04_0453 - 17886095-17886868,17887928-17888043,17888300-178884... 29 3.7
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 4.9
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 4.9
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 4.9
02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660 28 6.5
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 28 8.6
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 28 8.6
>06_03_0590 + 22574985-22578018,22578125-22578469,22579171-22579217,
22579450-22579573,22579622-22579686
Length = 1204
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 501 KHILLHKDGNIHPSTLLHPG--DDSSRVEVTSEQTLVVNLALVIYHALDYTHAEDEERLI 674
K ++ H N + T LHP + S R +T Q +N+AL + ALDY H + ++
Sbjct: 900 KALVFHYKANGNLDTWLHPRAHEHSKRKTLTFSQR--INIALDVAFALDYLHNQCASPIV 957
Query: 675 SPDLE 689
DL+
Sbjct: 958 HCDLK 962
>01_06_0784 +
31979670-31979976,31980092-31980337,31980428-31980544,
31980638-31980792,31980910-31980984,31981080-31981346,
31981436-31981756,31981858-31982271
Length = 633
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 410 LAYGRVERLQDLLEAD--AV*RIQRELRPAGRSGNTLAHHRAQPAGQ 276
LA+ + R++D+L AD A + ++E PA N A H Q AG+
Sbjct: 513 LAFNVMSRIEDVLNADDHAREKAKKEAPPAPAMANDAAEHHHQQAGE 559
>03_01_0367 +
2852287-2852603,2853202-2853278,2853388-2853431,
2854294-2854440,2854528-2854596,2854770-2854868,
2855155-2855193
Length = 263
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 471 RPQCISGSIAPTDSTVPRRAPRLWTS*TPPGSAGG*CSLKN--SA*TPSRRSLRQYPCAS 298
RP G A T P+ A + TPP S G + + SA +PS RS + P A+
Sbjct: 8 RPDDDGGRAASTFQRPPQPAGARPSLATPPPSGGAQSASTSGGSAGSPSSRSEQHVPAAA 67
Query: 297 SRSAGRPATIHP 262
+AG A P
Sbjct: 68 GMAAGAAAASTP 79
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 522 DGNIHPSTLLHPG--DDSSRVEVTSEQTLVVNLALVIYHALDYTHAEDEERLISPDLE 689
+GN+ T LHP + S R +T Q +N+AL + ALDY H + L+ DL+
Sbjct: 907 NGNL--DTWLHPRAHEHSERKTLTFNQR--INIALDVAFALDYLHNQCASPLVHCDLK 960
>11_04_0453 -
17886095-17886868,17887928-17888043,17888300-17888423,
17889734-17889963,17891395-17891452
Length = 433
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 574 RLLSSPGCSKVLGCIFPSLCSKICLG 497
R++ + GC K+L C FP+L S + +G
Sbjct: 54 RMVVTDGCLKLLACSFPNLKSLVLVG 79
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 549 LHPG-DDSSRVEV-TSEQTLVVNLALVIYHALDYTHAEDEERLISPDLE 689
+HP D SS VEV T Q L N+AL I ALDY H + ++ DL+
Sbjct: 831 IHPDIDPSSPVEVLTLMQRL--NIALDIGAALDYLHNNCQPAIVHCDLK 877
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -1
Query: 512 QDMLRLGHQVTGVSVRNASLEASRRLIAQCPGVLLAYGR-VERLQDLLE-ADAV*RIQRE 339
QD L + H++ V R +LEA + I QC L + + LQ++L+ + RI++
Sbjct: 881 QDKLAIAHEIDQVHERLHALEADKEFIKQCVRSLKKGDKGFDLLQEILQHLRDLRRIEQR 940
Query: 338 LRPAG 324
R +G
Sbjct: 941 TRNSG 945
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = -1
Query: 413 LLAYGRVERLQDLLEADAV*RIQRELRPAGRSGNTLAHHRAQPAGQ--RPSILTYNVHNT 240
L+ YG V L + A AV + L+ + +TL HH Q + L H+T
Sbjct: 358 LMQYGLVASLPSKVAASAVYAARLTLKKSPLWTDTLKHHTGFTESQLLDSAKLLVTSHST 417
Query: 239 TPIVPHFYSHKNFSQKYIVNVFLLSPCL 156
P +K +S + + V L SP +
Sbjct: 418 APESKLRVVYKKYSSEQLGGVALRSPAV 445
>02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660
Length = 383
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -3
Query: 438 TDSTVPRRAPRLWTS*TPPGSAGG*CSLKNSA*TPSRRSLRQY---PCASSRSAGRPATI 268
TD ++P++ P PP + C + + ++R+L P SS + A +
Sbjct: 144 TDPSLPQKKPL--EKIIPPNDSWAICRIFKKTNSTAQRALSHSWVSPPLSSTNEAYTAPV 201
Query: 267 HPYIQRSQHNTDRAALLFT 211
QRSQH +D + + T
Sbjct: 202 SQTTQRSQHTSDNTSSVMT 220
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 85 TIASTTTQYFKPPPCQPVTVTFRGRHGDNKN 177
T+A+ +Q PPP QPVT T G + N
Sbjct: 628 TVAAPISQTPPPPPPQPVTTTKNGNGTSSTN 658
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 516 HKDGNIHPSTLLHPGDDSSRVEVT 587
H DGNI P L++ G S +EVT
Sbjct: 390 HNDGNIFPYLLVNIGSGVSMIEVT 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,010,159
Number of Sequences: 37544
Number of extensions: 508990
Number of successful extensions: 1588
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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