Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C13
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical ...    30   1.2  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   6.5  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical
           protein T19A6.4 protein.
          Length = 344

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 301 PLLV*TSSSCLISWVAARPYSKQGIPKFATFIILINLSDIF---KSSAFFL 158
           P+L+ ++ SCL  W   R Y   G+PK     +++N   I      S+FFL
Sbjct: 87  PILIWSTVSCLTGWATTR-YGLFGVPKGIPSSVILNYIGIIVLVVGSSFFL 136


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
            protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 156  NSDILYME-NNQFLIFDSWNYQPSN*NLTFQTDHLSHNCR*VP*IIH 19
            +SD+  ME  N  L+F     +PS+ N+     H+S  C+ +  +IH
Sbjct: 928  HSDVNKMECRNLALMFGPSIVRPSDDNMATMVTHMSDQCKIIETLIH 974


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 156 NSDILYME-NNQFLIFDSWNYQPSN*NLTFQTDHLSHNCR*VP*IIH 19
           +SD+  ME  N  L+F     +PS+ N+     H+S  C+ +  +IH
Sbjct: 806 HSDVNKMECRNLALMFGPSIVRPSDDNMATMVTHMSDQCKIIETLIH 852


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 72   MSNFNWKVGNSNYQILRTGCFPYIKYHCSRKKAEDLNMSDKFMRIIK 212
            + N   K  N  ++I     FP   +H    K+ D  ++++FM + K
Sbjct: 891  IKNIYLKYQNKKFRIRVPELFPVSSFHIYADKSTDDKLTNQFMEVFK 937


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,370,777
Number of Sequences: 27780
Number of extensions: 213524
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)