Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C07
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.1  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +1

Query: 481 RHEFGRVQTILFPIYYAFNACMSLLGLLAYLRTQCLTEFENTSWIQ 618
           R  + R QT+     + FN  ++    +      CLTE +   W Q
Sbjct: 12  RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 202 PGGPAGTPP 176
           PGGP G PP
Sbjct: 48  PGGPPGAPP 56


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +1

Query: 481 RHEFGRVQTILFPIYYAFNACMSLLGLLAYLRTQCLTEFENTSWIQ 618
           R  + R QT+     + +N  ++    +      CLTE +   W Q
Sbjct: 12  RQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQ 57


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 244 KQAVVRLQESKAYVIATRTSQPF 312
           KQ + RL +   YV+  RT  PF
Sbjct: 226 KQFMPRLYDLLGYVMPDRTFAPF 248


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 400 VGAVATHLGAQIWMTLVSGI 459
           VGA ATH  + IW  +  G+
Sbjct: 338 VGASATHGASGIWGIIAIGL 357


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +1

Query: 481 RHEFGRVQTILFPIYYAFNACMSLLGLLAYLRTQCLTEFENTSWIQ 618
           R  + R QT+     + +N  ++    +      CLTE +   W Q
Sbjct: 274 RQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQ 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,579
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)