Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C06
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical ...    29   2.3  
U23454-5|AAC46516.1|   84|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium) v...    24   6.1  
U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium) v...    24   6.1  
U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium) v...    24   6.1  
Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical
           protein T24C4.9 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 158 LILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVH 337
           ++L  + ++  GYL SL  M + T    L  ++FG    + + +V+  + +  I +  + 
Sbjct: 25  MVLRSVIVLSAGYLASLALMGYFTIKMTLMCVVFGTNTLVIITDVISMIAVFTIRSDQLR 84

Query: 338 R 340
           R
Sbjct: 85  R 85


>U23454-5|AAC46516.1|   84|Caenorhabditis elegans Hypothetical
           protein C10A4.2 protein.
          Length = 84

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 347 FTTCLIFCVITIYYMNKLSQKKYAVVAPQPAAVKS 451
           F  CL+  ++ + Y+      KY V  PQPA   S
Sbjct: 8   FDICLVIALVIVNYLPDTPVSKYRVGPPQPAEYMS 42


>U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           b protein.
          Length = 495

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 199 WFINVHVLCNCCW 237
           W IN  ++ NCCW
Sbjct: 167 WKINDGLMSNCCW 179



 Score = 21.8 bits (44), Expect(2) = 6.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 301 DGNIIDCCWHG 333
           DG + +CCW G
Sbjct: 171 DGLMSNCCWRG 181


>U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           a protein.
          Length = 490

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 199 WFINVHVLCNCCW 237
           W IN  ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174



 Score = 21.8 bits (44), Expect(2) = 6.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 301 DGNIIDCCWHG 333
           DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176


>U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           c protein.
          Length = 477

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 199 WFINVHVLCNCCW 237
           W IN  ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174



 Score = 21.8 bits (44), Expect(2) = 6.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 301 DGNIIDCCWHG 333
           DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176


>Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical
           protein T03E6.4 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 329 MVHRICFTTCLIFCVITIYY 388
           M+  +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224


>Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical
           protein T03E6.1 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 329 MVHRICFTTCLIFCVITIYY 388
           M+  +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224


>AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical
           protein Y67D8B.5 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 341 ICFTTCLIFCVITIYYMNK 397
           ICF +CLI+ ++++ Y+ K
Sbjct: 8   ICFVSCLIWFIVSLMYIKK 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,727,006
Number of Sequences: 27780
Number of extensions: 232769
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)