Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C04
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    72   7e-14
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    57   2e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    56   5e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    52   8e-08
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    47   2e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    44   2e-05
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    32   0.091
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    31   0.16 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.9  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 34/90 (37%), Positives = 51/90 (56%)
 Frame = +2

Query: 119 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXX 298
           + DS + K+ + +  DKLVV+DF ATWCGPCK I PK ++  +                 
Sbjct: 5   VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLS 61

Query: 299 XXASEYNINSMPTFVFVKNGKKLDEFSGAN 388
             A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 62  EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 34/110 (30%), Positives = 55/110 (50%)
 Frame = +2

Query: 62  FKLVILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEI 241
           F L   F  S  L K++  ++   D  TR++   DK+ V+DF A WCGPCK + P L+++
Sbjct: 4   FALRRSFTSSRILRKVNA-VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL 60

Query: 242 AAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLDEFSGANV 391
            +E                  A +  + ++PT V  + G++LD   GA+V
Sbjct: 61  -SEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 173 VVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX-ASEYNINSMPTFVFV 349
           + +D  A WCGPCK I P   ++A++                   AS   + +MPTFVF 
Sbjct: 22  LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81

Query: 350 KNGKKLDEFSGAN 388
           +NGK++D  +GAN
Sbjct: 82  ENGKQIDMLTGAN 94


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 164 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXXASEYNINSMPTF 340
           DK++++ F A WCG CK + P+ +  A E+                   SEY+I   PT 
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98

Query: 341 VFVKNGKKLDEFSG 382
              KNGK++ ++SG
Sbjct: 99  NVFKNGKQISQYSG 112



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 167 KLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVF 346
           K V+++F A WCG CK + P  +++A E                   S  +I+  PT +F
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMF 432

Query: 347 VKNGKKLD 370
            K   K++
Sbjct: 433 FKANDKVN 440


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +2

Query: 107 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXX 286
           MS+ I   +  +  L    +++++++F A W  PCK +    D+ A +            
Sbjct: 1   MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKD-TKNAVFLKIEA 59

Query: 287 XXXXXXASEYNINSMPTFVFVKNGKKLDEFSGAN 388
                 A  +++N++P FV +   K L   SGAN
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +2

Query: 71  VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAA- 247
           VI  L ++      + ++  ++L+  +  A  K  +I+F ATWCG CK + P  +E+ A 
Sbjct: 9   VIFALFALVFASGVVELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGAL 67

Query: 248 -EMXXXXXXXXXXXXXXXXXASEYNINSMPTFV-FVKNGKKLDEFSGA 385
            E                  A +Y+I   PT + F  +G +  ++S A
Sbjct: 68  FEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 167 KLVVIDFMATWCGPCKMIGPKLDEI 241
           K V+++F A WCG CK + P  + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
 Frame = +2

Query: 125 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXX 304
           +S + +  +   G  LVV  F A WCG CK + P   ++A+ +                 
Sbjct: 37  NSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNR 94

Query: 305 A--SEYNINSMPTFVFVKNGKKLDEFSGAN 388
           A  S+Y +   PT   V    K    S  +
Sbjct: 95  AVCSQYQVQGFPTIKLVYPSSKGSSLSSTD 124


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
 Frame = +2

Query: 50  SYLHFKLVILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPK 229
           S +    V+ F+  +      + + D+D L++ +++       I +    CG CK +GP 
Sbjct: 8   SVMRISWVVAFITMVQTLVSGVPLTDND-LESEVSKG---TWFIKYYLPSCGACKRLGPM 63

Query: 230 LD---EIAAEMXXXXXXXXXXXXXXXXXASEYNINSMPTFVFVKNGKKLDE 373
            D   E A E                  +S  NI ++PT    +NG+ ++E
Sbjct: 64  WDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVEE 114


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 500 FLINEEKMFLTSVMNLKILIFSVC-SLWNAKN 592
           + +N +K+  +S+  L  LIF VC  LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,463
Number of Sequences: 5004
Number of extensions: 39797
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)