Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C02
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9999| Best HMM Match : CH (HMM E-Value=5.7e-16)                     52   4e-07
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_40161| Best HMM Match : CH (HMM E-Value=4.3e-30)                    50   2e-06
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)                    47   2e-05
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    40   0.002
SB_39164| Best HMM Match : RNB (HMM E-Value=0)                         40   0.002
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     35   0.062
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                31   1.0  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_14205| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-06)                 28   7.2  
SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)              28   9.5  

>SB_9999| Best HMM Match : CH (HMM E-Value=5.7e-16)
          Length = 158

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +3

Query: 651 QNVKLENFSTSWADGLAFCALLHHFLPDAFDYSKLTP 761
           + V+++NF+TSWADGLA CAL H+F P+   Y  L P
Sbjct: 57  RGVEIQNFTTSWADGLAMCALFHNFSPELIPYETLDP 93


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +3

Query: 651 QNVKLENFSTSWADGLAFCALLHHFLPDAFDYSKLTP 761
           + V + NFS S+A+GLAFCAL+H F PD FD+  L P
Sbjct: 466 KGVNITNFSGSFANGLAFCALIHKFNPDKFDFDSLDP 502


>SB_40161| Best HMM Match : CH (HMM E-Value=4.3e-30)
          Length = 144

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = +3

Query: 633 KLNKQSQNVKLENFSTSWADGLAFCALLHHFLPDAFDYSKLTP 761
           K  K  ++V + + S+SW DGLAFCA++H F PD  ++  L P
Sbjct: 12  KQTKSYKHVDINDMSSSWKDGLAFCAIIHRFRPDLLNFDSLKP 54


>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
          Length = 589

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 17/34 (50%), Positives = 29/34 (85%)
 Frame = +3

Query: 654 NVKLENFSTSWADGLAFCALLHHFLPDAFDYSKL 755
           +V++ +FS+SW +GLAF A+LH + P+AFDY+++
Sbjct: 253 DVEINDFSSSWQNGLAFSAILHSYNPEAFDYTEV 286


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 657 VKLENFSTSWADGLAFCALLHHFLPDAFDYSKL 755
           V + +FS SW DGLAF A+LH +    FD+ K+
Sbjct: 17  VTIRDFSKSWRDGLAFNAILHSYRGSLFDFGKI 49


>SB_39164| Best HMM Match : RNB (HMM E-Value=0)
          Length = 597

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 651 QNVKLENFSTSWADGLAFCALLHHFLPDAFDYSKL 755
           ++V + + + SW DG+A CA++H F PD  ++ +L
Sbjct: 552 RDVNVRDLTHSWRDGMALCAIIHRFRPDLINFEQL 586


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +3

Query: 645  QSQNVKLENFSTSWADGLAFCALLHHFLP 731
            +S  +K++NF+ S++DG A C LLHH+ P
Sbjct: 1217 KSYGLKIDNFTVSFSDGRALCYLLHHYHP 1245


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 627 EAKLNKQSQNVKLENFSTSWADGLAFCALLH 719
           E  L+     VKL++F+ SW DGLAF A++H
Sbjct: 134 EETLDGYEDVVKLKDFTVSWRDGLAFNAIIH 164


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 663 LENFSTSWADGLAFCALLHHFLPDAFDYSK 752
           + NF T W DG+A C L++   P     SK
Sbjct: 446 INNFDTDWRDGMAICELVNALQPGLIPDSK 475


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 639 NKQSQNVKLENFSTSWADGLAFCALLHHFLP 731
           +K  ++V ++NF+T W DG A   L+    P
Sbjct: 505 SKMPESVPMDNFTTHWNDGRAIACLVDAVAP 535


>SB_14205| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-06)
          Length = 392

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -1

Query: 444 RRLARCLQRFCHRARACFLFGHECADACPQPTSLLVIATLVQEFPEHAFVPAL---IYVE 274
           R+ A  L +  H A+  FL      DA     + L IA L+   P +AF  AL   I+ +
Sbjct: 203 RKNAHALVKMRHHAQWEFLSSWRAEDAVTALYAALAIAVLLCALPGYAFNAALGSRIFFD 262

Query: 273 LFDCASAGYLATTVADCL 220
                 + YLA T A  L
Sbjct: 263 PVTLPRSLYLAGTYAFAL 280


>SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 459 FGALPRRLARCLQRFCHRARACFLFGHECADACPQPTSLLVIATLVQEFPEHAFVPAL 286
           FG   + +   LQ      +     G E    C QP++ L I ++ + FPE+A    L
Sbjct: 784 FGVFLKDIKTALQTSYFATKTETKKGEEITKYCFQPSAELTIGSIQKAFPEYASTSTL 841


>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
          Length = 546

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 692 VRPARRKVLQLYILGLFVEFCFSSCRNLANGDTVFGAG 579
           V+   R++ Q+ +   F +FC S  R+L N DT+   G
Sbjct: 402 VKIKERELRQIDVASSFGQFCKSLSRSLENCDTMLAGG 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,550,990
Number of Sequences: 59808
Number of extensions: 320803
Number of successful extensions: 621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)