Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B23
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   3.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.5  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   6.0  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.9  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
 Frame = +2

Query: 437 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVXTGAPYKKDEPVEKTTV 616
           LP  S++   +  + + G   ++ PI+  V  T  +   +PI  T             T 
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 281

Query: 617 ETLDVSTTQEPKT---SXPAVVTAAP 685
            T   ++T  P T   + P   T  P
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPTVPP 307


>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 261 PMSTKVGISFHRGAKR-LNGERFSHGN--VNWSSV 166
           PM+TK+G  +++G +    G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 152  QPVTITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 250
            +P  ITDD    P  N     L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 198 FSHGNVNWSSVMVTGCAITSLSRAGKAV 115
           FSHG   WS +++ G   T  S   KAV
Sbjct: 155 FSHGRKPWSGILLYGPPGTGKSYLAKAV 182


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 509 PISENVDKTK--NTERVVPIVXTGAPYKKDEPVEKTTVETLDVSTTQEPKTSXPAVVTAA 682
           P+ E+V K++         ++    P  K+E  E  + E  +    Q P  + PAV T A
Sbjct: 399 PVKEDVPKSQVGGETDTTDVINNSTP--KEETEESPSTELPETGKEQPPNKAEPAVPTEA 456


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 575 APYKKDEPVEKTTVETLDVSTTQEPKTSXPAVVT 676
           +P     P+  +T  TLD S    P  S PAV++
Sbjct: 273 SPQPYSGPILASTAPTLDGSYLSNPSNSNPAVMS 306


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 423 KNWLANTSWSSSLASCDPWTKIKS 352
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,416
Number of Sequences: 5004
Number of extensions: 45540
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)