Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B22
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.98 
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    29   0.98 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    28   1.3  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   2.3  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   4.0  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   4.0  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   6.9  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 294 QEVSNGPDKDRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPI-IPNSA 446
           Q+ S  P    ++PN      +N+ + +  +K+DS K     SAPI +P S+
Sbjct: 28  QKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSS 79


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 249 LYSGFRNCYNVNRQYQEVSNGPDKDRKIPNRIPVRDENDCDT 374
           L + F   +N N+Q+Q     PDKD +I    PV     C T
Sbjct: 360 LTASFNKFFNANKQFQ-----PDKDERIQQEGPVEQRPLCPT 396


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
 Frame = +3

Query: 60  HEMDPHDDWKSAERP-NYLTNVDLEYPYSELPYIAQYKLLKLPFTGELIEHVDYWGEGSI 236
           H + P D+ ++     NY T++ L     E+    +Y LL +P +    +  + +  GS 
Sbjct: 570 HGLFPVDEARNVRFSINYFTSIGLGALTEEM---REY-LLTMPKSEPKEQDSEGYSSGSE 625

Query: 237 VNGGLYSGFRNCYNVNRQYQEVSNGPDKDRKIPNRIPVRDENDCDTRAYIKDD 395
                 S + + Y+  R Y   +    K R       V   N+ + + YI+ D
Sbjct: 626 TGSTYSSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSVTPINNINHKKYIRKD 678


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 330 IPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMV 488
           +P  IPV  E+  DT+A +K  S + +T +   +I N+  DI R + E +  +
Sbjct: 173 LPQIIPVVSESMWDTKAEVKKQSKETMTKV-CTLIANA--DIDRFIPELINCI 222


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 622 ASPSLSVPVSNRAARSPDSIAEACSSARQP 533
           +SPSLS+P   +   SP+  A A SS  +P
Sbjct: 656 SSPSLSIPTDFQKEASPNKGAAALSSKVEP 685


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 431 DGRAHERHYFDRVILDVSPGVAVVLVAHRDSVGDLAILVR 312
           DG A    +F    + +S   AV+L      +GDLAIL+R
Sbjct: 311 DGLAITSAFFTNTSIGISTTFAVLLHEIPAEIGDLAILLR 350


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 276 NVNRQYQEVSNGPDKDRKIPNRIPVRDE 359
           NV +Q+Q+    P+ D +I   +P+ DE
Sbjct: 109 NVYKQHQDDLAPPEADNQITRDVPISDE 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,031
Number of Sequences: 5004
Number of extensions: 56991
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)