Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B22
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498...    31   1.0  
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904...    30   1.8  
07_01_0923 - 7761383-7761549,7761849-7762086,7762962-7763028,776...    29   4.1  
02_05_0073 - 25602268-25603182,25603273-25604190                       29   4.1  
07_01_0245 - 1803170-1803887,1803971-1804641                           29   5.4  
05_04_0240 + 19325981-19326260,19327135-19327156,19327361-193274...    28   7.2  
12_02_0905 - 24188563-24189189,24189648-24190577                       28   9.5  
12_01_0856 + 8034181-8035425                                           28   9.5  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    28   9.5  

>01_01_0653 -
           4981517-4981738,4981841-4981976,4982066-4982121,
           4982228-4982284,4982373-4982450,4982533-4982619,
           4982707-4982767,4982862-4982950,4983048-4983145,
           4983242-4983341,4983983-4984042
          Length = 347

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 774 PQESXDQLLDHKTDVIMFQGLRDSHCLVVVPGRHVL 667
           P  S D+L+D   DV+ F GL    CL V  G ++L
Sbjct: 97  PVPSVDELVDQVADVLDFFGLGSVMCLGVTAGAYIL 132


>06_03_0479 -
           21289903-21290124,21290207-21290342,21290435-21290490,
           21290734-21290811,21290902-21290988,21291067-21291127,
           21291220-21291308,21291448-21291545,21291655-21291754,
           21293968-21294030
          Length = 329

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 774 PQESXDQLLDHKTDVIMFQGLRDSHCLVVVPGRHVL 667
           P  S D+L D  +DV+ F GL    CL V  G ++L
Sbjct: 98  PVASVDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133


>07_01_0923 -
           7761383-7761549,7761849-7762086,7762962-7763028,
           7763784-7763974
          Length = 220

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/69 (20%), Positives = 26/69 (37%)
 Frame = +3

Query: 36  PPIMSAGRHEMDPHDDWKSAERPNYLTNVDLEYPYSELPYIAQYKLLKLPFTGELIEHVD 215
           PP  +  R +    D W      N L + +  +P  E   +      ++ F G+   H++
Sbjct: 53  PPSSTKIRRQEKERDTWMIPHVQNALRHYNARHPGGEFDVVKPLMQARVVFKGQHWFHIN 112

Query: 216 YWGEGSIVN 242
           +W      N
Sbjct: 113 FWARSRSSN 121


>02_05_0073 - 25602268-25603182,25603273-25604190
          Length = 610

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 263 P*LLQRKPTVPRGQQRAGQGSQDPQQNPGA 352
           P + +R  T PRG  R G G  +PQ++ G+
Sbjct: 466 PGVHKRHATAPRGDIRGGGGETEPQESAGS 495


>07_01_0245 - 1803170-1803887,1803971-1804641
          Length = 462

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 292 YCRFTL*QLRKPEYSPPLTILPSPQ*STCSISSPVKGSLSSLY 164
           YC+  L +L       PL + PSP+ S     +P  G+L++ +
Sbjct: 39  YCKIRLNKLPYQTADAPLLLPPSPEASAAPAPAPATGALAAAF 81


>05_04_0240 +
           19325981-19326260,19327135-19327156,19327361-19327484,
           19327721-19327811,19327984-19328073,19328450-19328550,
           19328702-19328866
          Length = 290

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 374 GVAVVLVAHRDSVGDLAILVRPVADLLVLSVYVVAVTEARIQSPVDDTPLTP 219
           G A++LV+  D  G  A  +R +AD +  S Y V V +     P  D P  P
Sbjct: 83  GRAIILVS--DYYGFRAPKLRQIADKVAYSGYYVVVPDLLYGDPYTDDPARP 132


>12_02_0905 - 24188563-24189189,24189648-24190577
          Length = 518

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 347 RDSVGDLAILVRPVADLLVLSVYVVAVTEARIQSPVDDTPLTPVVD 210
           RD+ G   + +RP    LVL+V + A T  R  + VD   L  +++
Sbjct: 171 RDAAGGAKVTLRPRLFELVLNVMLRAATTRRRHASVDARKLQEIIE 216


>12_01_0856 + 8034181-8035425
          Length = 414

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 503 HSVDDDHADALVNDSRNVSGAVRNDGRAHERHYFDRVI 390
           HSV+DD  D     +R+V+ A+ N+  A      D V+
Sbjct: 243 HSVEDDRTDVKRQKTRHVNSALANEIDAMNAKLIDTVV 280


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 631 KPRASPSLSVPVSNRAARSPDSIAEACSSARQ 536
           +PR  PS   P++  AA +P+S A ACS+ R+
Sbjct: 8   EPRHHPSRP-PLAPAAAHAPNSAAAACSTPRR 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,374
Number of Sequences: 37544
Number of extensions: 422268
Number of successful extensions: 1372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)