Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B22
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.34 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -3

Query: 455 NVSGAVRNDGRAHERHYFDRVILDVSPGVAVVLVAHRDS---VGDLAILVRPVADLLVLS 285
           N+  A+RN  R    +     + D+ PG  +  +AH  S   V   A      A L+   
Sbjct: 365 NIFKALRNRARKARANRKPN-LGDIKPGSIIENIAHTRSGYSVARFAETALGAAALVAPG 423

Query: 284 VYVVAVTEARIQSPVDDTPLTPVVDMLDQLSSE 186
           +     T +      D+TPL PVV + +  S+E
Sbjct: 424 MEEPTNTASGSNEDEDETPLDPVVVISNDKSTE 456


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 244 PLTILPSPQ*STCSISSPVKGSLSS 170
           P+  +P PQ +  +I SPV+  LSS
Sbjct: 792 PVYCVPVPQVNDSTILSPVREKLSS 816


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 278  RKPTVPRGQQRAGQGSQDPQQNPGARRERLR 370
            R    PR   RA  G  D +Q P  R + +R
Sbjct: 908  RSNVTPRSPGRAWPGDSDIRQRPIPRSDDIR 938


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 345 PVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSA-RDITRIVN 470
           P+R  +DC T + +  D   +V L       +S  R +  IV+
Sbjct: 419 PIRKISDCSTTSSLSGDESDVVELQPVKSSKSSGWRKLRNIVH 461


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 594 LTGTDNDGLARGFPQQATSY 653
           LT  D DG  +GFP + + Y
Sbjct: 17  LTTQDVDGFLQGFPGKNSPY 36


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 626 WLSSTSNFLWICCSSTCRPGTTTRQ 700
           W   T +     CS  C PG   +Q
Sbjct: 437 WARGTKDIPISACSLPCEPGMIKKQ 461


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 305  QRAGQGSQDPQQNPGARRER 364
            QR  + SQ+ QQN   +RER
Sbjct: 1645 QRPMKESQENQQNAETQRER 1664


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 305  QRAGQGSQDPQQNPGARRER 364
            QR  + SQ+ QQN   +RER
Sbjct: 1641 QRPMKESQENQQNAETQRER 1660


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 626 WLSSTSNFLWICCSSTCRPGTTTRQ 700
           W   T +     CS  C PG   +Q
Sbjct: 527 WARGTKDIPISACSLPCEPGMIKKQ 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,790
Number of Sequences: 438
Number of extensions: 4345
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)