Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B18
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...   169   5e-43
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   4.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   4.2  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   5.6  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   9.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.7  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score =  169 bits (410), Expect = 5e-43
 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 9/204 (4%)
 Frame = +3

Query: 231 SEPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKG-KQCF 407
           +E D+S G YG++ + +S+     R YT + ++S K DGQTV +RAR+ TSR +G K CF
Sbjct: 67  NEIDYSAGKYGDLPLNRSTARP-GRTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCF 125

Query: 408 AVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDV 587
             LRQ   T+Q L  VN+   ISKQMVK+ G+I+ ESIV VE  V ++   ++S T++D 
Sbjct: 126 FSLRQKYDTIQALAVVNKDT-ISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATVQDA 184

Query: 588 ELVAHQIWTVSSARSQLPLQIEDAARPEK--------SDEPEALKIRVNXDTRLDNRVLD 743
           E+    I+ +S  +  LP  +EDA R E+        + E ++  +RVN DTRLDNRVLD
Sbjct: 185 EIHISSIYVISPIKKNLPFLVEDAGRSEEQIRESEENAAEGDSKFVRVNLDTRLDNRVLD 244

Query: 744 LRTPANQAVFRIEAGVCRLFRDIL 815
           LRTP NQA+F I+AG+C+ FR+ L
Sbjct: 245 LRTPTNQAIFDIQAGICQAFREFL 268


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +3

Query: 369 RLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVR 548
           R+Q +   G+Q   +L+     + L++   E++  + +  K TG I +  +V V  + + 
Sbjct: 35  RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94

Query: 549 TAAPVE 566
             AP++
Sbjct: 95  LIAPMD 100


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 802 KSLQTPASILKTAWLAGVRRS 740
           K +Q P S+L T W+  +RRS
Sbjct: 693 KVIQAPNSLLNTLWILNMRRS 713


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 196 SIRLHQLSHQRNQSLTSQKDF 258
           SIR+  LSHQR  ++  QK+F
Sbjct: 86  SIRIKSLSHQRKAAVELQKNF 106


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = -3

Query: 755 RRAQIQNPIVEPGVXVHADLQGF-RLITLLRSGRVLDLQRKLGSGARYRPYLMSHQFH-- 585
           R+A I++   E  + + +D+    + I LLR G+V+ +   LGS   +  Y +S + H  
Sbjct: 625 RKAMIESKDGEAFLNMQSDISIVDKRILLLRRGKVITVLNNLGSYYIHFHYTVSAEEHKW 684

Query: 584 --VLNC 573
             VL+C
Sbjct: 685 MDVLSC 690


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 622 LDTVHI**ATSSTSLIVHDSTGAAVLTTEASTSTI 518
           LDT+H    TSST  I+ DS      T +  TST+
Sbjct: 22  LDTLH----TSSTEQIIKDSENVVHTTLKLPTSTL 52


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 592 SSTSLIVHDSTGAAVLTTEASTSTIDSLVMLPV 494
           + T  +V ++TGAA   T  S  T DSL + P+
Sbjct: 542 AETDALVSENTGAASQKTSKSYKTNDSLKVPPL 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,825
Number of Sequences: 5004
Number of extensions: 52092
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)