Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_B18
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 120 2e-27
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 105 4e-23
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 37 0.017
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 33 0.36
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 31 1.1
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 29 4.4
12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805 29 5.8
06_03_0190 - 17708513-17708548,17708897-17709295 29 5.8
01_07_0105 - 41104655-41104851,41105818-41107150 29 5.8
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 7.7
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 120 bits (288), Expect = 2e-27
Identities = 72/203 (35%), Positives = 119/203 (58%), Gaps = 6/203 (2%)
Frame = +3
Query: 219 PSTESEPDFSEGLYGNMKMIQ-SSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKG 395
P +++ F+ YG++ + + S RV+T++ L G++V +R Q R
Sbjct: 56 PQADADDPFAAN-YGDVPVEEIQSKTISGRVWTEIGGLDEAAAGRSVLIRGAAQAIRPVS 114
Query: 396 KQ-CFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESC 572
K+ F VLR++ STVQ ++ + +S QMV+F ++++ESIVDVE V P+++
Sbjct: 115 KKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSLSKESIVDVEGVVSLPKEPLKAT 174
Query: 573 TIKDVELVAHQIWTVSSARSQLPLQIEDAARPE----KSDEPEALKIRVNXDTRLDNRVL 740
T + VE+ +I+ ++ A LP+ +EDA+R E K+++ +RV DTRL+ R +
Sbjct: 175 T-QQVEIQVRKIYCINRAIPTLPINLEDASRSEAEIEKAEQAGEKLVRVGQDTRLNYRAI 233
Query: 741 DLRTPANQAVFRIEAGVCRLFRD 809
DLRTPANQA+FRI+ V FR+
Sbjct: 234 DLRTPANQAIFRIQCQVENKFRE 256
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 105 bits (252), Expect = 4e-23
Identities = 65/176 (36%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Frame = +3
Query: 309 YTDVENLSIKMDGQTVWVRARLQTSRAKGKQ-CFAVLRQTSSTVQLLVSVNEQRKISKQ- 482
+ DV L + G+ V VR RA G++ F VLRQ SSTVQ +V
Sbjct: 42 WADVAALGPDVAGRAVRVRGAAHAVRAVGRRVAFLVLRQGSSTVQCVVGGGGGGGGGGDA 101
Query: 483 -MVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDA 659
+ +F ++RES+VDV V PV T ++VE+ +++ +S A LP+ ++DA
Sbjct: 102 GVARFAAGLSRESVVDVAGVVSLPREPVRGTTQQEVEIQVKKLYCISKATPNLPISVDDA 161
Query: 660 ARPE----KSDEPEALKIRVNXDTRLDNRVLDLRTPANQAVFRIEAGVCRLFRDIL 815
AR E K+ + V D RLD RV+DLRTPANQA+FR++ + +FR +L
Sbjct: 162 ARSEEDVVKAKAAGEQLVHVGQDKRLDFRVIDLRTPANQAIFRVQCEIENIFRQVL 217
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 37.1 bits (82), Expect = 0.017
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Frame = +3
Query: 384 RAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPV 563
RA F LR S TVQ+ ++ E ++ + K + ES+V VE V
Sbjct: 114 RAHAGLTFLTLRDRSGTVQV-TTLPEYPEVYAVVNK----LRVESVVAVEGVVRSRPTEA 168
Query: 564 ESCTIKD--VELVAHQIWTVSSARSQLPLQIEDAARPEKSDEPEALKIRVNXDTRLDNRV 737
+ +K +E+ A I+ ++S LP I A K PE +++R RV
Sbjct: 169 INTDMKTGAIEVAADNIYVLNSVTRSLPFPIT-TADTVKEKFPEEIRLRF--------RV 219
Query: 738 LDLRTPANQAVFRIEAGVCRLFRDIL 815
LDLR P Q+ R+ V + R L
Sbjct: 220 LDLRRPQMQSNLRLRHNVVKHIRRYL 245
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 660 PRPRSAEEAGIWRSIPSISDEPPVP 586
P PRS E+ + R++PS++ +PPVP
Sbjct: 610 PVPRSPSESWLSRTLPSVTSKPPVP 634
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 31.1 bits (67), Expect = 1.1
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 5/148 (3%)
Frame = +3
Query: 321 ENLSIKMDGQTVWVRARLQTSRAKGKQCFAVLRQTSSTVQL--LVSVNEQRKISKQMV-- 488
+NL+ KMDGQ +RA L+ + + F V T+ V L + + ++ V
Sbjct: 757 DNLTYKMDGQKSLLRA-LKMEEIRNRSEFQVRSNTNLQVDYSKLDKLEQTPSTTESEVLE 815
Query: 489 KFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDAARP 668
+ NI + DV TA + + ++ Q+ + AR L L++ A
Sbjct: 816 TYMANIEWQVFSDVLREAHCTALGTIKLMQERLHMLEIQLRDSNDARDSLVLKLNAALDQ 875
Query: 669 EKS-DEPEALKIRVNXDTRLDNRVLDLR 749
KS E EA I D + N++L+ +
Sbjct: 876 AKSVKETEAEYILKCDDFMVKNKILEAK 903
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 506 HERVDSRRGGFGREDG----RPSRIVHN*GRGTGGSSDMDGIERQIPASSADRG 655
HE+V+ R G + RPSR + N GRG+ S G + PA++A RG
Sbjct: 139 HEKVEDRLWGMPTKQAIGVVRPSRAIKNFGRGSMHGS---GATKDGPANTACRG 189
>12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805
Length = 310
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 345 RPF*YSNFQHQCKPCHDVHLTIGSFSYSHKVLLR 244
RP + F H C+ D HL I S +SHK+ R
Sbjct: 110 RPLTQAAFDHLCQATFD-HLNIVSIDFSHKLSFR 142
>06_03_0190 - 17708513-17708548,17708897-17709295
Length = 144
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 577 LRTWNWWLIRYGRYRAPDPSFLCRSRTRP 663
+R W W R R P PS RSR RP
Sbjct: 1 MRRWRGWRGHRRRSRGPPPSRTSRSRLRP 29
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = +3
Query: 450 SVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSAR 629
SVNE+ K + I E DVE S TAA + +KD +V + T ++A
Sbjct: 63 SVNEEVKGKGKATPKEKAIDEEK-KDVEEST--TAAAADEVVVKDTGVVIVEKTTTAAAA 119
Query: 630 SQLPLQIEDAARPEKSDEPEALKIRVNXDTR 722
P ++ +K +E + + V D +
Sbjct: 120 KATPAAVKKIVEEKKKEEAKNKQEAVTDDKK 150
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +3
Query: 465 RKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVE 590
R + K+M++ + TR + +D+E + + A P+E C + ++E
Sbjct: 582 RALPKRMIQAIQHFTRLTYLDMEETGIVDAFPMEICCLVNLE 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,379,094
Number of Sequences: 37544
Number of extensions: 397943
Number of successful extensions: 1319
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -