Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B18
         (817 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    32   0.018
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    25   2.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   6.4  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   6.4  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   8.5  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 32.3 bits (70), Expect = 0.018
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +2

Query: 632 PASSADRG----RGQTGEE**AGSLEDPREPXHPARQSGFGSAHAG*PGRLQDRG-RGLQ 796
           P  S ++G    RGQ GE    G    P +P    R   FG    G PG+  DRG  GL 
Sbjct: 316 PGRSGEKGQAGDRGQVGERGHKGEKGLPGQPGPRGRDGNFGP--VGLPGQKGDRGSEGLH 373

Query: 797 ALQG 808
            L+G
Sbjct: 374 GLKG 377



 Score = 23.4 bits (48), Expect = 8.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 545 EDGRPSRIVHN*GRGTGGSSDMDGIERQIPASSADRG-RGQTG 670
           E G P+R   N  +G  G    DG+E  +P    + G RG  G
Sbjct: 212 EKGEPARHPENYNKGQKGEPGNDGLE-GLPGPQGEVGPRGFPG 253


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 297 DVHLTIGSFSYSHKVLLRSQALIPLMAELMKPYARLSFVVSQR 169
           D +  +G     H+V+     +  L   L  P  R+SF  ++R
Sbjct: 77  DTYFQVGPLQAFHRVITMENFMKTLAPSLWPPAERISFCYTER 119


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 581 GRGTGGSSDMDGIERQIPASSADRGRGQ 664
           G G GG   +DG    IP+   DR RG+
Sbjct: 250 GGGGGGGMQLDGRGNAIPSMVVDR-RGE 276


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 536 FGREDGRPSRI 568
           FG+ED RPSRI
Sbjct: 688 FGQEDARPSRI 698


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 467 EDQQTDGQIHRQHHERVDSRRGG 535
           + QQ   Q+H  HH   ++  GG
Sbjct: 151 QQQQQQQQLHHHHHHHHNAPAGG 173


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,127
Number of Sequences: 2352
Number of extensions: 13365
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)