Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_B18
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 185 3e-47
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 32 0.43
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 32 0.43
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 31 0.99
AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical ... 30 2.3
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 29 4.0
U58756-8|AAY44005.1| 183|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 29 4.0
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 29 4.0
U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical pr... 28 7.0
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 185 bits (451), Expect = 3e-47
Identities = 97/199 (48%), Positives = 137/199 (68%), Gaps = 5/199 (2%)
Frame = +3
Query: 234 EPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKGKQCFAV 413
+ D S+ YG+ ++ S E + + V+ +++ + VWVR R+ T+R+KGK CF V
Sbjct: 45 QEDASKDFYGSYGLVNSK-EKKVLNFLKVKEINVSNATKDVWVRGRIHTTRSKGKNCFLV 103
Query: 414 LRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVEL 593
LRQ TVQ+ + +NE KISKQM+KF +I++ESIVDV A++ + P+ESCT KDVEL
Sbjct: 104 LRQGVYTVQVAMFMNE--KISKQMLKFVSSISKESIVDVYATINKVDNPIESCTQKDVEL 161
Query: 594 VAHQIWTVSSARSQLPLQIEDAAR-----PEKSDEPEALKIRVNXDTRLDNRVLDLRTPA 758
+A Q++ VS++ +LPLQIEDA+R EK+ E E VN DTRLDNRV+DLRTP
Sbjct: 162 LAQQVFVVSTSAPKLPLQIEDASRRAPTDEEKASEQENQLAVVNLDTRLDNRVIDLRTPT 221
Query: 759 NQAVFRIEAGVCRLFRDIL 815
+ A+FRI+AG+C FR+IL
Sbjct: 222 SHAIFRIQAGICNQFRNIL 240
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 678 HSSPVWPRPRSAEEA-GIWRSIPSISDEP--PVPRP*LCT 568
H S P P +E G W +PS EP PVPRP L T
Sbjct: 468 HGSGSGPMPEQTDEVPGPWEPVPSPVPEPEDPVPRPELAT 507
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -2
Query: 678 HSSPVWPRPRSAEEA-GIWRSIPSISDEP--PVPRP*LCT 568
H S P P +E G W +PS EP PVPRP L T
Sbjct: 468 HGSGSGPMPEQTDEVPGPWEPVPSPVPEPEDPVPRPELAT 507
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 32.3 bits (70), Expect = 0.43
Identities = 27/76 (35%), Positives = 30/76 (39%)
Frame = +2
Query: 587 GTGGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPREPXHPARQSGFGSAHAG*PG 766
G G+ G Q A + GRG G AG P +P HP GS G PG
Sbjct: 143 GPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHP------GS--PGNPG 194
Query: 767 RLQDRGRGLQALQGYP 814
R R RGL G P
Sbjct: 195 RGGQRSRGLPGPSGRP 210
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 31.1 bits (67), Expect = 0.99
Identities = 26/76 (34%), Positives = 29/76 (38%)
Frame = +2
Query: 587 GTGGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPREPXHPARQSGFGSAHAG*PG 766
G G+ G Q A + GRG G AG P +P HP GS G PG
Sbjct: 143 GPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHP------GS--PGNPG 194
Query: 767 RLQDRGRGLQALQGYP 814
R R RG G P
Sbjct: 195 RGGQRSRGTPGASGRP 210
>AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical
protein H22K11.2 protein.
Length = 644
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Frame = +1
Query: 592 WWLIR---YGRYRAPDPSFL 642
WWLIR G+YR+ DPSF+
Sbjct: 134 WWLIRNTKIGKYRSSDPSFM 153
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Frame = +2
Query: 587 GTGGSSDMDGIERQIPASSADRGR-GQTGEE**AGSLE---DPREPXHPARQSGFGSAHA 754
G G DG Q P + GR GQ G + AG +P +P HP + G
Sbjct: 162 GQVGRPGPDGRPGQ-PGRRGNDGRPGQPGPQGNAGQPGRDGNPGQPGHPGKDGRRGHGSP 220
Query: 755 G*PGRLQDRGRGLQALQGYP 814
G PGR GR Q G P
Sbjct: 221 GAPGRAGQPGR--QGAPGNP 238
>U58756-8|AAY44005.1| 183|Caenorhabditis elegans Hypothetical
protein F58F9.11 protein.
Length = 183
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 342 DGQTVWVRARLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFT 497
DG T+W+R R S + G C ++++T + + + K + FT
Sbjct: 106 DGDTMWIRTRRCLSESAGCNCTGNNTESTTTCPCRAMTSIESGLEKLSISFT 157
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +3
Query: 459 EQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVS 620
EQ+++++ +V+ E+ DVE+ VV++ + + H+IW ++
Sbjct: 799 EQQRLARLLVELHSRRPLEASSDVESIVVQSLTSTDDLVCSEAARTFHRIWVLA 852
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +3
Query: 459 EQRKISKQMVKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVS 620
EQ+++++ +V+ E+ DVE+ VV++ + + H+IW ++
Sbjct: 799 EQQRLARLLVELHSRRPLEASSDVESIVVQSLTSTDDLVCSEAARTFHRIWVLA 852
>U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical
protein T24D8.1 protein.
Length = 494
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 542 REDGRPSRIVHN*GRGT--GGSSDMDGIERQIPASSADRGRGQTGEE**AGSLEDPREP 712
R DG+PS IV T G + D+D + R++ + + G GE+ A ++ +P EP
Sbjct: 336 RGDGQPSLIVDT-ALSTLFGAARDIDDLVRKVATLNEEEGVRGDGEQHIALNMLNPEEP 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,223
Number of Sequences: 27780
Number of extensions: 306862
Number of successful extensions: 980
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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