Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_B17
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0022 - 13834090-13834128,13835217-13835282,13835364-138354... 82 4e-16
12_01_0741 + 6649988-6653065 33 0.32
10_08_0373 - 17286104-17288839 31 1.3
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 3.0
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 28 6.9
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 28 6.9
01_01_0418 - 3142659-3145622 28 6.9
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243... 28 9.2
07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518... 28 9.2
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133... 28 9.2
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 28 9.2
>03_03_0022 -
13834090-13834128,13835217-13835282,13835364-13835461,
13836340-13836493,13836742-13836798,13836906-13837028
Length = 178
Score = 82.2 bits (194), Expect = 4e-16
Identities = 46/162 (28%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Frame = +1
Query: 205 KWALDFNQKNKQLSTE--LPSPPGYSQSS----NANYAESSKDSDSNLLLIKKLWDVALG 366
+WA++ + + S+ +P PPG+++S+ +A A KDS++ +K W+VA
Sbjct: 10 RWAVELHDASSSSSSHSSIPDPPGFTRSAPDADDAAGARQRKDSET-AWKAQKAWEVAQA 68
Query: 367 PLKQVPMNLFIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVEG--TQAIGQKI 540
P K + M F+M+MAG+++ +F I + + +P+ AL + F+ + + K+
Sbjct: 69 PFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALRSVGKVFEPFKDPRVDTLAPKL 128
Query: 541 VYCIGNIVNILLALYKCQSMGLLPTHSSDWLAFEEPQTRLEH 666
V+ N+ + L ++K ++GLLPT++SDW+ P +E+
Sbjct: 129 VFIALNLAAMGLGVWKLNTLGLLPTNASDWVFSLAPAREVEY 170
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 32.7 bits (71), Expect = 0.32
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Frame = +1
Query: 229 KNKQLSTELPSPPGYS--QS---SNANYAESSKDSDSNLLLIKKLWDVALGPLKQVPMNL 393
KN +S LP+ G S QS SN N++ + S SNL +KKL A G +P ++
Sbjct: 319 KNLGISGNLPNFSGESVLQSISVSNTNFSGTIPSSISNLKSLKKLALGASGFSGVLPSSI 378
Query: 394 FIMYMAGNSISIFPIMMVGMLIVRPVKALFATQSTFKMVE-GTQAIGQKIVYCIGNIVNI 570
M S+S+ + G+ +V + + + ++ +++ T + I IG + +
Sbjct: 379 GKM----KSLSLLEVS--GLDLVGSIPSWISNLTSLNVLKFFTCGLSGPIPSSIGYLTKL 432
Query: 571 L-LALYKCQSMGLLPT 615
LALY CQ G +P+
Sbjct: 433 TKLALYNCQFSGEIPS 448
>10_08_0373 - 17286104-17288839
Length = 911
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 585 IEC*KNVYYISDTINN--FLSDSLCTFNHFESTLCS 484
+EC ++ +IS +N F+SD CT++HF++ CS
Sbjct: 872 MECHSSIKFISRDMNREIFVSDG-CTYHHFQNGACS 906
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 471 EGAVCYTKYFQNG*RYTSYRTKNCLLYRKYSKHSFST 581
EGAV Y KYF+ YR + LL K++ H+ T
Sbjct: 20 EGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVT 56
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 628 NHLSELVTIPYSDTYRVLKECLLYFR-YNKQFFVR 527
N + ++++ Y+D LK CLLY Y + F +R
Sbjct: 401 NDMQRILSLSYNDLPHYLKTCLLYLSIYPEDFVIR 435
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 205 KWALDFNQKNKQLSTELPSPPGYSQSSN-ANYAESSKDSDSNLLLIKKLWDVALG 366
KWA+ F + ++ + PGY SS+ AN+ S + + L + K+ DV++G
Sbjct: 464 KWAVSFEEWPREAYPPYANGPGYIVSSDIANFVVS--EMEKGRLNLFKMEDVSMG 516
>01_01_0418 - 3142659-3145622
Length = 987
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Frame = +1
Query: 283 SNANYAESSKDSDSNLLLIKKLWDVALGPLKQVPMNLFIMYMAGNSISIFPIMMVGMLIV 462
S+ N++ +S N+ ++ L + +++P ++ G S+ + + G +V
Sbjct: 309 SSTNFSGPIPNSVGNIKSLENLGVASSDFSQELPSSI------GQLRSLNSLEITGAGVV 362
Query: 463 RPVKALFATQSTFKMVEGTQA-IGQKIVYCIGNIVNIL-LALYKCQSMGLLP 612
V + A ++ +++ + + KI IG I N+ LALYKC G +P
Sbjct: 363 GAVPSWIANLTSLTLLDFSNCGLSGKIPSAIGAIKNLKRLALYKCNFSGQIP 414
>07_03_1521 +
27419859-27420106,27422050-27423363,27423885-27424308,
27424540-27424968,27425228-27425305,27426581-27426839,
27428542-27428552
Length = 920
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 166 IVTMSQLKSNKKLKWALDFNQKNKQLSTELPSPPGYSQS 282
I+ +S SN+KL + + NK LST +P PG S
Sbjct: 822 IIDLSSQISNEKLGEDVSIHTINKFLSTSMPRRPGAGAS 860
>07_01_0686 -
5184061-5184267,5184655-5184762,5185405-5185578,
5185680-5185808,5185891-5186178,5186341-5186570,
5186619-5187516
Length = 677
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 205 KWALDFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSNLLLIKKLWDVALG 366
KWA+ + + +++ + PGY SS+ A S+ D L L K+ DV++G
Sbjct: 567 KWAVTYEEWPEEVYPPYANGPGYVISSDIAGAIVSEFRDQKLRLF-KMEDVSMG 619
>03_06_0352 -
33312443-33312652,33312747-33312854,33313224-33313397,
33313489-33313695,33313700-33313987,33314087-33314319,
33314450-33315263
Length = 677
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 205 KWALDFNQKNKQLSTELPSPPGYSQSSN-ANYAESSKDSDSNLLLIKKLWDVALG 366
KW++ + + +++ + PGY SS+ A Y S + D+ L + K+ DV++G
Sbjct: 566 KWSVSYEEWQEEVYPPYANGPGYVISSDIAQYIVS--EFDNQTLRLFKMEDVSMG 618
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 184 LKSNKKLKWALDFNQKNKQLSTELPSPPGYSQSSNANYAESSKDSDSN 327
L S+ K LD ++ ++L + P+PP + SSNA A +DS S+
Sbjct: 7 LGSDFAQKLLLDLRRRRERLGFDSPAPPQRTSSSNA--AVLPRDSHSS 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,861,170
Number of Sequences: 37544
Number of extensions: 353900
Number of successful extensions: 828
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -