Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B07
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    31   0.74 
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611...    31   1.3  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    28   6.9  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   9.1  

>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = -3

Query: 574  ERVSKIFIALNSRRARNPAHDKWSPVIINFSSAIGVAVYH--LSFNKLLIYSVTSILISH 401
            ERV    I + S+  ++P   +   V I  S  +G A  H  LSF  LLI ++ + L   
Sbjct: 1878 ERVLPSIIPILSQGLKDPDASRRQGVCIGLSEVMGSAGKHQLLSFMDLLIPTIRTALCDS 1937

Query: 400  NENVRNIIMFGHFHLYLLIQKTQLSKYIPQLI 305
             + VR         LY       + + +P L+
Sbjct: 1938 TQEVRESAGLAFSTLYKSAGLQAIDEIVPTLL 1969


>01_06_1480 -
           37660591-37660720,37660899-37660930,37661061-37661155,
           37661460-37661527,37661608-37661694,37662884-37662912,
           37663019-37663138,37663854-37663905,37663986-37664050,
           37664174-37664536,37664637-37664711,37664803-37664940,
           37665025-37665181,37665471-37665478,37665576-37665710,
           37665965-37666082,37666791-37666915,37667571-37667717,
           37668297-37668380,37668671-37668800,37669196-37669347,
           37669678-37669857,37670660-37670731,37671104-37671295,
           37671366-37671411,37671498-37671647,37671725-37671882,
           37671995-37672101,37672191-37672407,37672484-37672696,
           37672852-37672972,37673072-37673253,37673475-37673672,
           37674770-37674967
          Length = 1447

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 496 IINFSSAIGVAVYHLSFNKLLIYSVTSILISHNENVRNIIMFGHFHLYLLIQK 338
           + NF   + V   H  FN  +IY++  +L SH   + N +      L LL+ K
Sbjct: 631 LYNFCKVLSVKCSHSIFNWEMIYAILEVLFSHRNELTNHVE-AACDLLLLVSK 682


>11_04_0442 -
           17790811-17790889,17791047-17791114,17791144-17791166,
           17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = -3

Query: 565 SKIFIALNSRRARNPAHDKWSPV--IINFSSAIGVAVYHLSFNKLLIYSVTSILISHNEN 392
           S++F+  N++ A N    K      + N++    V+VY  S+ +L++ S+ S       +
Sbjct: 598 SRLFLPPNTQGALNDFSQKTKVTNWLQNYAKVDFVSVY--SYAQLIVNSLGS-------D 648

Query: 391 VRNIIMFGHFHLYLLIQKTQL-SKYIPQLI 305
            R++I F HF LY   QK  + S Y+P L+
Sbjct: 649 RRSVIAFAHF-LYHSTQKKYIESYYLPDLL 677


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 538 RRARNPAHDKWSPVIINFSSAIGVAVYHLSFNKLLIYSVT-SILISH---NENVRNIIMF 371
           R  R+P  D W   ++    ++GV    LS + L ++  T +  I H   NE +  ++ F
Sbjct: 7   RGMRSPQRDSWKTTLLLAYQSLGVVYGDLSISPLYVFKSTFAEDIQHSETNEEIFGVLSF 66

Query: 370 GHFHLYLL 347
             + L L+
Sbjct: 67  VFWTLTLI 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,706
Number of Sequences: 37544
Number of extensions: 246615
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)