Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B06
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 605 AVTDPFPFTSCPAGSAR 555
           A ++PFPF   P G+ R
Sbjct: 313 ATSEPFPFLMLPLGAGR 329


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 619 EVDVSLSQTHSH 584
           E D SLS THSH
Sbjct: 636 ERDASLSSTHSH 647


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 605 AVTDPFPFTSCPAGS 561
           A ++PFPF   P G+
Sbjct: 313 ATSEPFPFLMLPLGA 327


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +3

Query: 309 LDIXTNLESNMNTETEPSPKKKTDKITDNLTVSLEKCDIKKIEKSDEEPKPRIVLTIRSE 488
           L + T+ +S +N E E         +  NLT   ++  +KK   + E     ++  +R  
Sbjct: 439 LPVHTSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVVRQS 498

Query: 489 KSNA 500
           +  A
Sbjct: 499 EEEA 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,356
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)