Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B05
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   3.1  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    26   4.1  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    26   4.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.1  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    25   9.4  
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos...    25   9.4  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   9.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.4  

>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 381 PKNFEV*L*KISMALSKKLLPKVSMTNFQFSFKNVVTS-LLASCS 250
           P+N+   +  IS   ++KL+  +S+ N  ++ K  +TS LL  C+
Sbjct: 53  PRNYHKFVDTISRKPTRKLVHHISLNNVSYASKASITSRLLRRCA 97


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +3

Query: 180 IVKLSTIIKFWERQSFMLTISSWVNKKL 263
           ++ LS ++   E ++F LTI +W+++++
Sbjct: 403 MITLSLVLTESELEAFKLTIKAWIHRRM 430


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 85  ISFAMDGRASQQVLYKRAFGKHFINRP 5
           + F M G  + ++ YK A   HF N+P
Sbjct: 136 VYFQMSGSDANEIAYKLAMLHHFNNKP 162


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 514 LRITIFYFLNVISYLILI 461
           L  T++YF  VISYL+++
Sbjct: 177 LSTTLYYFYPVISYLVVV 194


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 152 DGEIYMKCDYSKIKYDYQILGKTKFYA 232
           DGE  ++  +  +KYD+ I  KT FY+
Sbjct: 176 DGEASLR-SFDLMKYDFIITYKTSFYS 201


>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -3

Query: 424 RCKVIRKIMLSGYRAEKFRGVAVENIHGFIKETSSKSIHDELPIFV 287
           RCK +++++LS    +K +    +++     E+S+  +HD    F+
Sbjct: 97  RCKTLKEMVLSHLNEKKRKIYEAKDMFDIGSESSTLLLHDASSQFI 142


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 312 ILLEEVSLIKPWIFSTATPRNF 377
           +++   +L+KPWIF     R F
Sbjct: 480 VMIARGALVKPWIFEEIEARQF 501


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 200 YQILGKTKFYADNLFLGEQEASKLVTTFLNEN 295
           Y ILG  KFY D L   +   +   T  L++N
Sbjct: 781 YSILGSRKFYGDYLSASKPNGTLWNTCGLSQN 812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,550
Number of Sequences: 5004
Number of extensions: 44410
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)