Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B05
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,519...    27   7.2  
12_02_1119 + 26213719-26213955,26214039-26214197,26214640-262147...    27   9.5  
12_02_1040 + 25616967-25617276,25618042-25618163,25618397-256186...    27   9.5  
12_01_0301 - 2280215-2281154,2281271-2281338                           27   9.5  
09_04_0524 + 18321110-18323978,18324098-18324576                       27   9.5  
06_03_0416 + 20568087-20568702,20568767-20570313                       27   9.5  
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178...    27   9.5  
01_01_0905 + 7116121-7116236,7116285-7116339,7116948-7117005,711...    27   9.5  

>06_01_0715 -
           5193648-5193897,5193987-5194255,5195011-5195350,
           5195691-5195845,5196547-5196557,5197632-5197689,
           5197855-5198004,5198074-5198169,5198398-5198818,
           5198835-5198950,5199041-5199149,5199483-5199532,
           5200936-5201004,5201366-5201459,5201550-5201820,
           5202273-5202607,5202718-5202786,5202834-5202904
          Length = 977

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 77  EGNGKVQLEKLQISMKFPVYAQKRDDGEIYMKCDYSKIKYDYQILGKTKFYADNL-FLGE 253
           +   KVQ   L   +   ++++   +G    +C   K++    +L KTK   DN+  + +
Sbjct: 344 QSRAKVQFADLPEDLLCTIFSKIATEGCCEDQCFVKKLEAHVDLLHKTKIRWDNINAILQ 403

Query: 254 QEASKLVTTF 283
           Q + K+V  F
Sbjct: 404 QHSGKIVEEF 413


>12_02_1119 +
           26213719-26213955,26214039-26214197,26214640-26214702,
           26214813-26214902,26214984-26215106,26215344-26215431,
           26217043-26217117,26218109-26218215
          Length = 313

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 56  GGTTVHGEGNGKVQLEKLQISMKFPVYAQKRDDGEIYMKC 175
           GG TV G G+G V      I   + V A+   DG  + +C
Sbjct: 113 GGATVEGTGSGFVWDTAGHIVTNYHVVAKLAGDGSAFHRC 152


>12_02_1040 +
           25616967-25617276,25618042-25618163,25618397-25618623,
           25618708-25618885,25619054-25619197,25619448-25619669
          Length = 400

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 21  CFPKAL--L*RTCWEARPSMAKEMEK 92
           C P A+  + R CW+A P +  EME+
Sbjct: 336 CCPSAMASIMRRCWDANPEVRPEMEE 361


>12_01_0301 - 2280215-2281154,2281271-2281338
          Length = 335

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 247 QEEIVSIKLCLSQNLIIVLNFTIVALHIDFSIITFLRIHGKFHTD 113
           Q E+++++L +   + +VLNFT     +D S +      G FH D
Sbjct: 204 QAELLALQLAME--IALVLNFTDTIFLMDCSTVVDTAKKGNFHED 246


>09_04_0524 + 18321110-18323978,18324098-18324576
          Length = 1115

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 56  GGTTVHGEGNGKVQL-EKLQISM 121
           GG  VHGEG  +V L +KL ISM
Sbjct: 747 GGRVVHGEGAWEVTLYQKLDISM 769


>06_03_0416 + 20568087-20568702,20568767-20570313
          Length = 720

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 382 AEKFRGVAVENI--HGFIKETSSKSIHDELPIFV*-ECRYEFTSFLFTQEEIVSIKLCLS 212
           A K R +AV N+    F+   ++   H +L       CR  F    F  ++I S    L+
Sbjct: 327 ARKTRFLAVPNVTHFNFVYNWTTNEDHCKLSCMDDCSCRASF----FQHKDISSGFCFLA 382

Query: 211 QNLIIVLNFTIVALHIDFSIITFLRIHGKFH 119
            N+  ++NF+  +   +FS   FL+I    H
Sbjct: 383 FNIFSMINFSAQSYSSNFSSSAFLKIQDSTH 413


>01_06_1300 +
           36116511-36116636,36116672-36116734,36117782-36117833,
           36118144-36118224,36118651-36118775,36118831-36118934,
           36119487-36119615,36119899-36121054
          Length = 611

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 43  KELVGRHDRPWRRKWKSSIRKTTNQYEIS 129
           K L GR D   +  W SS+RK  + Y  S
Sbjct: 222 KVLPGRTDNSIKNHWNSSLRKKQDMYNTS 250


>01_01_0905 +
           7116121-7116236,7116285-7116339,7116948-7117005,
           7117637-7117731,7117823-7117926,7118310-7118438,
           7118845-7120633,7120849-7121054,7121865-7121949,
           7122183-7122422
          Length = 958

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 43  KELVGRHDRPWRRKWKSSIRKTTNQY 120
           K L GR D   +  W SS++K  N Y
Sbjct: 181 KFLPGRTDNSIKNHWNSSVKKKVNSY 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,770
Number of Sequences: 37544
Number of extensions: 247619
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)