Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B05
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68012-2|CAA92020.1|  408|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    27   8.5  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    27   8.5  

>Z68012-2|CAA92020.1|  408|Caenorhabditis elegans Hypothetical
           protein T24D5.2 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 245 LGEQEASKLVTTFLNENWKFVMDTF 319
           +GE + SK V+T   EN   VMD+F
Sbjct: 207 MGEMDLSKCVSTITAENLTVVMDSF 231


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 210 WERQSFMLTISSWVNKKLVNS*RHS*TKIGSSSWILLEE 326
           ++RQ+  LTISSW N K      ++ T++   S+I  EE
Sbjct: 194 YDRQNCTLTISSWTNSKSALD-YYADTEVSMQSFIPNEE 231


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 210 WERQSFMLTISSWVNKKLVNS*RHS*TKIGSSSWILLEE 326
           ++RQ+  LTISSW N K      ++ T++   S+I  EE
Sbjct: 194 YDRQNCTLTISSWTNSKSALD-YYADTEVSMQSFIPNEE 231


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 210 WERQSFMLTISSWVNKKLVNS*RHS*TKIGSSSWILLEE 326
           ++RQ+  LTISSW N K      ++ T++   S+I  EE
Sbjct: 194 YDRQNCTLTISSWTNSKSALD-YYADTEVSMQSFIPNEE 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,634,690
Number of Sequences: 27780
Number of extensions: 240159
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)