Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B03
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    27   2.8  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   3.7  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   6.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.4  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   8.5  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   8.5  

>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 636 QIIVKTEIKPLESPDIPIKKLKNEVXDEKELKED 737
           +IIVK+ +K L   +IPI+KL+  +    +LKED
Sbjct: 96  EIIVKSILKSL---NIPIEKLRFVIGSSYQLKED 126


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 551 RQVVPSWLSTIFHTNFCII*NLTYSNFILTNFNFTFRACGPTAFRIFNFEVL 396
           R+++  WL  I H+NFC++    Y    + +   + R+C  + F++     L
Sbjct: 169 REILNEWLVEI-HSNFCLMPETLYLAVNIIDRFLSRRSCSLSKFQLTGITAL 219


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 381 DNSALKDFKVEYSKSSRAT 437
           +NSALKD  VEY  +  AT
Sbjct: 87  ENSALKDINVEYQSNLSAT 105


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +1

Query: 397 RTSKLNIRKAVGPHALNVKLKFVRMKLEYVRFYMIQKLV*NMVDNQDGTTCLVSLNAEMN 576
           R    ++ ++   H   + +KF   +L    F+ + K+V N  +N D    +  +    N
Sbjct: 384 RDDSKHLYESAVDHGRRLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVKFILDSQN 443

Query: 577 F 579
           F
Sbjct: 444 F 444


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 612 FDDLKKADQIIVKTEIKPLESPDIPIKKLKNEVXDEKELKED 737
           +D +K A++   + E+K LES D   K ++N +   K+ K D
Sbjct: 73  YDSMKSAER--EQMELKRLESKDRRPKYMENLIESAKKRKRD 112


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 432 ATCPECEIKICKDEIRICKILYDTEVGMKYG 524
           A C E ++++ KDE+ +C IL+D  +   +G
Sbjct: 68  ADCVETDVRLTKDEV-VC-ILHDRNLNRVFG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,196
Number of Sequences: 5004
Number of extensions: 50532
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)