Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_B03
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 38 0.011
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478... 38 0.011
05_05_0333 + 24153090-24153593 29 3.9
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 29 5.1
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 8.9
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 28 8.9
03_01_0602 - 4428651-4428847,4429070-4429150,4429226-4429604,443... 28 8.9
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +3
Query: 396 KDFKVEYSKSSRATCPECEIKICKDEIRICKILYD 500
K +K EY+KS R++C C I KD++R+ K++++
Sbjct: 6 KAWKAEYAKSGRSSCKSCRSPIGKDQLRLGKMMWN 40
>01_06_0634 +
30746767-30747012,30747083-30747118,30747554-30747850,
30748482-30748544,30748643-30748696,30748837-30748854,
30749554-30749625,30749731-30749787,30750160-30750236,
30751013-30751094,30751585-30751701,30752083-30752210,
30753074-30753143,30753725-30753765,30753963-30753990,
30754151-30754210
Length = 481
Score = 37.5 bits (83), Expect = 0.011
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +3
Query: 408 VEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVKCRNELLYF 587
VEY+KS R+TC C I +R+ + D G +W+H+ CF
Sbjct: 128 VEYAKSGRSTCKGCSESIAAGALRLGASIRDPR-GF---DSTKWYHIACFPSSTYPAFPV 183
Query: 588 AGGENLPGFDDLK 626
ENL GFD ++
Sbjct: 184 ---ENLKGFDSIE 193
>05_05_0333 + 24153090-24153593
Length = 167
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 585 FAGGENLPGFDDLKKADQIIVKTEIKPLESP-DIPIKK 695
F+G E P F AD ++V ++KP P D P K+
Sbjct: 94 FSGVETTPKFGSFNPADDLLVAFQLKPPPPPMDAPAKE 131
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 594 GENLPGFDDLKKADQIIVKTEIKPLESPDIPIKKLKNEVXDEKELKED 737
G+ L GF L +I + K +++ ++P +KL +V D+K +ED
Sbjct: 330 GDGL-GFGKLSALKEITGEMNDKEVDADEVPEEKLPADVTDDKTSEED 376
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 591 GGENLPGFDDLKKADQIIVKTEIKPLESPDIPIKKLKNE 707
G + GFD+ K D I++ +P E+P I K E
Sbjct: 1292 GEDAQDGFDETKALDSAIIRGRAQPQETPRAAITPSKQE 1330
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 618 DLKKADQIIVKTEIKPLESPDIPIKKLKNEVXDEKELKED 737
+LKK I + T ++ E+P P++ LK D K L+ED
Sbjct: 770 ELKKVRSIGLPTILEESETPKAPMEDLKPWRIDAKFLRED 809
>03_01_0602 -
4428651-4428847,4429070-4429150,4429226-4429604,
4430084-4430216,4430298-4430404,4430490-4430761,
4431581-4431755
Length = 447
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +3
Query: 381 DNSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFV 560
D AL+D + + + + CP+ + D + +L+D ++ + + W+H+P F
Sbjct: 320 DGPALRDAESQQYLAQVSCCPQVHVVASVDHVN-APLLWDKKM-VHTQFKWSWYHVPTFA 377
Query: 561 KCRNELLYFA 590
+ E ++F+
Sbjct: 378 PYKVEGMHFS 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,752
Number of Sequences: 37544
Number of extensions: 287327
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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