Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_B03
         (737 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribos...   139   4e-33
BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p pro...   139   4e-33
AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E prote...   139   4e-33
AF051548-1|AAC24518.1|  994|Drosophila melanogaster poly(ADP-rib...   139   4e-33

>D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribose)
           polymerase protein.
          Length = 994

 Score =  139 bits (336), Expect = 4e-33
 Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
 Frame = +3

Query: 384 NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 564 CRNELLYFAGGENLPGFDDLKKADQIIVKTEIKPLESPDIP-IKKLKNEVXDEKE 725
            R+EL +FA GE++PGF  L   DQ  VK  I P++S ++P  K+ K E+ D  E
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIKSEELPDTKRAKMELSDTNE 219



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 402 FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


>BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p
           protein.
          Length = 994

 Score =  139 bits (336), Expect = 4e-33
 Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
 Frame = +3

Query: 384 NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 564 CRNELLYFAGGENLPGFDDLKKADQIIVKTEIKPLESPDIP-IKKLKNEVXDEKE 725
            R+EL +FA GE++PGF  L   DQ  VK  I P++S ++P  K+ K E+ D  E
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIKSEELPDTKRAKMELSDTNE 219



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 402 FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


>AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E protein
           protein.
          Length = 613

 Score =  139 bits (336), Expect = 4e-33
 Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
 Frame = +3

Query: 384 NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 564 CRNELLYFAGGENLPGFDDLKKADQIIVKTEIKPLESPDIP-IKKLKNEVXDEKE 725
            R+EL +FA GE++PGF  L   DQ  VK  I P++S ++P  K+ K E+ D  E
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIKSEELPDTKRAKMELSDTNE 219



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 402 FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


>AF051548-1|AAC24518.1|  994|Drosophila melanogaster
           poly(ADP-ribose) polymerase protein.
          Length = 994

 Score =  139 bits (336), Expect = 4e-33
 Identities = 65/115 (56%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
 Frame = +3

Query: 384 NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 564 CRNELLYFAGGENLPGFDDLKKADQIIVKTEIKPLESPDIP-IKKLKNEVXDEKE 725
            R+EL +FA GE++PGF  L   DQ  VK  I P++S ++P  K+ K E+ D  E
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIKSEELPDTKRAKMELSDTNE 219



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 402 FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 563
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,197,083
Number of Sequences: 53049
Number of extensions: 523793
Number of successful extensions: 1431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)