Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A23
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 31 0.14
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 29 0.98
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 28 1.7
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 2.3
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 27 3.9
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 27 3.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.2
SPAC167.06c |mug143|SPAC57A7.02c|sequence orphan|Schizosaccharom... 26 6.9
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 26 6.9
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 9.1
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 58 INSVVGNAFNKMSEEESVDIEQELDELLTNVQPNLQDVFKRGFTNVALQQTKNGEQLK 231
INS +G A +MS EES + + +L V N F R ++ Q K G+++K
Sbjct: 468 INSSIGKAILEMSREESAPLVMHVTKLYNTVDANNFYAFARVYSG----QVKKGQKVK 521
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 28.7 bits (61), Expect = 0.98
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 2 TQYVSITVINNYLSNRNYKLIV**GMRLTKCPKKRVLILNKNSTNS*RTCNPTYKMYLKE 181
++Y++IT N ++ L+ L PK+ L + K NS C+ T K LKE
Sbjct: 182 SKYLNITTSNRFIRKAIQSLVKIEFPTLKSYPKRTFLQVRKAIENSTTQCSATSKSELKE 241
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.9 bits (59), Expect = 1.7
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Frame = +1
Query: 259 FAKNTQVNLSRLELVKSPTFHVQTLSLDLKS-MSMAVRCSLGEV---NIRGLYSAYN--E 420
F+ N +N L++ SP+ H Q+ +L+L + +R SL ++ N S+ N E
Sbjct: 1372 FSFNKDLNQQLLDIETSPSEHTQSYNLNLLDVLQHTLRDSLKDIYTLNTGADNSSDNVEE 1431
Query: 421 NLYNLIPVMADGHVVI-SLSNMTADVNIGLVIEDDAF 528
N NL HV S+ N + L I DD F
Sbjct: 1432 NADNLFQSSVLDHVHFKSVVNNEVPADERLAISDDIF 1468
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 85 NKMSEEESVDIEQELDELLTNVQPNLQDVFKRGFTNVAL 201
N +SE + D E L + L+ + NL+ VFK+G T+VA+
Sbjct: 50 NSLSENSNSDSEN-LAKTLSPIFDNLESVFKKG-TDVAI 86
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 304 KSPTFHVQTLSLDLKSMSMAVRCSLGEVNIRGLYSAYNENL 426
K P ++ LSL L+S+SM + IRG ++A+ N+
Sbjct: 82 KYPKDFIKYLSLALESISMGKEPEYQDQLIRGCFAAFYNNI 122
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 385 VNIRGLYSAYNENLYNLIPVMADGHVVISLSNM 483
+ + GL S ++ +NL+ ++ GH V++L+N+
Sbjct: 1 MKVLGLISGGKDSCFNLMHCVSLGHEVVALANL 33
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +1
Query: 61 NSVVGNAFNKMSEEESVDIEQELDELLTNVQPNLQD 168
+SVV N SEEE+ D+++E++++ ++ +L +
Sbjct: 3966 DSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNE 4001
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 58 INSVVGNAFNKMSEEESVDIEQELDELLTNVQPNLQDVFKRGFTNVALQQTKNGEQLK 231
++ V+ +A K+ +EES + E DE + + L +VF+ ++ KN ++ K
Sbjct: 726 LDKVLEDADAKVKDEESSEEELMNDEQMLALDEKLAEVFRERKKASNKEKKKNAQETK 783
>SPAC167.06c |mug143|SPAC57A7.02c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 58 INSVVGNAFNKMSEEESVDIEQEL---DELLTNVQPNLQDVFK 177
+NS++GN + ++E+ V +E+ L ELL N LQ K
Sbjct: 64 LNSLLGNIKVRTAQEDGVSVEEVLMHHPELLRNAPHALQQSVK 106
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 49 KL*INSVVGNAFNKMSEEESVDIEQELD-ELLTNVQPNLQDVF 174
KL S+VGN SE+E D+E E+D + L + D+F
Sbjct: 216 KLHSQSLVGNNCEVNSEDEFSDLESEVDPDELEKAMCPISDMF 258
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.1
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 256 YFAKNTQVNLSRLELVKSPTFHVQTLSLDLKSMSMAVRCSLGEVNIRGLYSAYNENLYNL 435
YF++N L+RL L+K+ F V L L S + C V++R ++ + E NL
Sbjct: 541 YFSRNNDKQLARLFLIKN--FLV--LKDQLNSFDIHYACIEAGVDLRKVWDSVREWRSNL 596
Query: 436 IPVM 447
V+
Sbjct: 597 RGVL 600
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,161
Number of Sequences: 5004
Number of extensions: 64153
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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