Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A23
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0801 + 23308993-23309091,23309503-23309604,23310212-233103...    28   7.2  
11_05_0087 + 18970741-18972702                                         28   7.2  
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916...    28   7.2  
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...    28   7.2  
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           28   7.2  
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414...    28   9.5  

>12_02_0801 +
           23308993-23309091,23309503-23309604,23310212-23310388,
           23310473-23310715,23310896-23310947,23310998-23311145,
           23311240-23311321,23311462-23311557,23311641-23311742,
           23312048-23312164,23312329-23312400
          Length = 429

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 343 LKSMSMAVRCSLGEVNIRGLYSAYNENLYNLIPVMAD 453
           + ++ + VR  +G+  IRG+YS + +N  + I ++AD
Sbjct: 201 IATLPLEVRTKIGDF-IRGVYSVFQDNSVHSIDLLAD 236


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 761 RNGWWLAARPPPDVAVA-YHVEARXRGNDIAXVSGKSSMCLAS 636
           R GW     PPP   ++  +      G DI  +SG+S  CL S
Sbjct: 539 RRGWPKPPPPPPPTKISCMNQSLDDAGGDIHGLSGRSFACLRS 581


>10_05_0101 -
           9167383-9167679,9167883-9167961,9168161-9168326,
           9169201-9169299,9169969-9171361
          Length = 677

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 499 IGLVIEDDAF--SFINPGIDFAHDEVLVKLSWPSPQRNGGYEFVTTEQLAKHIDDLPL 666
           + L++E+D+F  S   P ++  H+E L   S P       ++ +  E+   H  ++PL
Sbjct: 202 LDLILENDSFGQSEAIPEVEIIHEEPLHMESEPDSTAESSFQLLQPEEEEIHPPEIPL 259


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 382 EVNIRGLYSAYNENLYNLIPVMADGHVVISLSNMTADVNIGLVIEDD 522
           EV+  G  +  N   Y  IPV   GH V   +N  A++++G  + ++
Sbjct: 291 EVDFEGENTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDALNEN 337


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +1

Query: 280 NLSRLELVKSPTFHVQTLSLDLKSMSMAVRCSLGEVNIRGLYSAYNENLYNLIPV----- 444
           NLS L+ +  P+  +      L+++S  +   LGE N+ G   A+  NL +L+ V     
Sbjct: 244 NLSALKYLSIPSAKLTGSIPSLQNLSSLLVLELGENNLEGTVPAWLGNLSSLVFVSLQQN 303

Query: 445 MADGHVVISLSNM 483
              GH+  SL  +
Sbjct: 304 RLSGHIPESLGRL 316


>05_04_0322 +
           20239793-20240127,20240176-20240728,20241317-20241425,
           20244456-20244723,20244943-20245197,20245594-20246539
          Length = 821

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -3

Query: 377 SEQRTAMLIDFRSKDKVWTWNVGDLTSSNLD 285
           S+  T +L++ +S+  VW+ NV ++TSSN+D
Sbjct: 375 SQDGTLVLLN-QSRSVVWSSNVPNVTSSNVD 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,705
Number of Sequences: 37544
Number of extensions: 401164
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)