Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A23
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 31 1.2
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 29 2.8
U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam ... 29 3.7
U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam ... 29 3.7
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ... 29 3.7
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ... 29 3.7
AC006627-6|AAK85462.3| 249|Caenorhabditis elegans Hypothetical ... 29 3.7
Z49127-4|CAF31502.1| 113|Caenorhabditis elegans Hypothetical pr... 29 4.9
U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like prot... 28 8.5
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 61 NSVVGNAFNKMSEEESVDIEQELDE--LLTNVQPNLQDVFKRGFTNVALQQTKNGEQLKP 234
N G F+ +++++ E+ L LL P + +FK G N+++ ++ +LKP
Sbjct: 761 NRYSGAQFHSRNKKKTAMAERRLKNSALLLKEFP-VPQMFKAGQRNMSISSIQSNGRLKP 819
Query: 235 DTLADTSYFA-KNTQVNLSRLELVKS-PTFHVQTLSL 339
+ +S + N +V SRL KS T H+ L
Sbjct: 820 SFMPSSSKLSWSNLKVKASRLSKSKSIDTTHLDVTRL 856
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 58 INSVVGNAFNKMS--EEESVDIEQELDELLTNVQPNLQDVFKRGFTNVALQQTKNG 219
IN +G K+S EEE+ I+ +LDEL QP ++ + V LQQ G
Sbjct: 758 INDALGELQEKLSILEEEAYCIQDKLDELDEKFQPAIKTKNESEKNYVELQQEVKG 813
>U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam
protein 6, isoform c protein.
Length = 774
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 326 WTW-NVGDLTSSNLDRLTCVFLAKYEVSARVS 234
WTW N D + + ++TC+ L+ E+SA V+
Sbjct: 560 WTWDNTSDCDTKHAVQITCINLSGSEISATVA 591
>U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam
protein 6, isoform a protein.
Length = 964
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 326 WTW-NVGDLTSSNLDRLTCVFLAKYEVSARVS 234
WTW N D + + ++TC+ L+ E+SA V+
Sbjct: 750 WTWDNTSDCDTKHAVQITCINLSGSEISATVA 781
>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
protein 6, isoform b protein.
Length = 1227
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 326 WTW-NVGDLTSSNLDRLTCVFLAKYEVSARVS 234
WTW N D + + ++TC+ L+ E+SA V+
Sbjct: 1013 WTWDNTSDCDTKHAVQITCINLSGSEISATVA 1044
>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
protein 6, isoform d protein.
Length = 1196
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 326 WTW-NVGDLTSSNLDRLTCVFLAKYEVSARVS 234
WTW N D + + ++TC+ L+ E+SA V+
Sbjct: 982 WTWDNTSDCDTKHAVQITCINLSGSEISATVA 1013
>AC006627-6|AAK85462.3| 249|Caenorhabditis elegans Hypothetical
protein E01A2.5 protein.
Length = 249
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 385 VNIRGLYSAYNENLYNLIPVMADGHVVISLSNM 483
+ + GL S ++ YNL+ + +GH +++L+N+
Sbjct: 1 MQVVGLISGGKDSCYNLMCAVREGHQIVALANL 33
>Z49127-4|CAF31502.1| 113|Caenorhabditis elegans Hypothetical
protein F13D12.4b protein.
Length = 113
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +1
Query: 187 TNVALQQTKNGEQLKPDTLADTSYFAKNTQVNLSRLELVKSPTFHVQTLSLD 342
TN + N Q + D++ A NT N S T HVQT SLD
Sbjct: 54 TNEVIAMVPNATQAEMQAAVDSAKNAFNTWKNTSFQIPTDPSTMHVQTSSLD 105
>U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical
protein T21D11.1 protein.
Length = 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 58 INSVVGNAFNKMSEEESVDIEQELDELLTNVQPNLQDVFKRG 183
+ + + AFN+ S SVD + +L+T P++ F++G
Sbjct: 71 VRNTMHRAFNEWSTVSSVDFREIPPDLVTKQPPDIYIAFEKG 112
>AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like protein
protein.
Length = 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 58 INSVVGNAFNKMSEEESVDIEQELDELLTNVQPNLQDVFKRG 183
+ + + AFN+ S SVD + +L+T P++ F++G
Sbjct: 71 VRNTMHRAFNEWSTVSSVDFREIPPDLVTKQPPDIYIAFEKG 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,450
Number of Sequences: 27780
Number of extensions: 354514
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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