Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A22
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   4.0  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    26   7.1  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   7.1  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -2

Query: 709 PHLSRSLAS*NTRVSETKHRARALRHKTYIFSIIRSLHI*KRFLRNSES*G 557
           PHLS  L S        +HR + L+ +    S+  +LH  KRFL NS+S G
Sbjct: 110 PHLSCELPS--------EHREKCLKRRNS--SLSSNLHANKRFLFNSQSDG 150


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 IPLMQNTFLLKYLDRILLFLTNVSTERLATLRNVNG 462
           +P  +NT L  + D  LL    V  E   T++ +NG
Sbjct: 286 VPFSENTLLSVHSDLSLLLRKRVPGEGFITIKKLNG 321


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 452 FLKVARRSVETLVKNNNIRSKYFKRNVFCINGM 354
           +L+V ++S+E+L       ++Y+ +NV+  NGM
Sbjct: 288 YLEVWQKSLESLRHYTASLNEYYYQNVYSANGM 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,628
Number of Sequences: 5004
Number of extensions: 43648
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)