Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A22
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 626 VYF*HYSFTTHIKKVFTKQRIVRSSALLKI*LKINSIDAKDHL 498
           +++ HY    HI  VFTKQ+ V+    L +    N  D  D+L
Sbjct: 6   IHYQHY----HITPVFTKQKKVKEDTELNLQTIFNE-DKLDNL 43


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 461 PLTFLKVARRSVETLVKNNNIRSKYFKRN 375
           P+TF  VARRSV       N  S+ ++ N
Sbjct: 677 PITFQDVARRSVAN-SPTKNADSREYRSN 704


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 202  PFPERNYNSCEMI 240
            P P  NYN+C+ I
Sbjct: 1655 PVPGSNYNTCDRI 1667


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 698 RQVRSHLRISFTINIS 745
           + +R+HLR + T+N+S
Sbjct: 127 QHLRTHLRGTLTVNVS 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,771
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)