Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A20
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 32 0.54
02_04_0509 - 23554609-23555241,23555371-23556318 31 0.71
01_05_0490 + 22672241-22674679 31 0.71
06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791 30 1.6
02_02_0355 + 9312814-9313650 29 2.9
07_03_0565 - 19561078-19561425,19562253-19563746 29 3.8
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493... 29 3.8
11_04_0273 + 15643469-15643654,15644882-15644914,15645688-15645735 29 5.0
08_02_0841 - 21749599-21749978,21750409-21753367 29 5.0
03_01_0320 - 2510907-2512190 29 5.0
12_01_0694 - 5923836-5924450 28 6.6
11_04_0250 + 15335457-15335882 28 6.6
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 28 6.6
03_05_1157 + 30816143-30816359,30817005-30817120 28 6.6
10_08_0182 + 15513693-15515273 28 8.8
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 28 8.8
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 28 8.8
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 28 8.8
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 143 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVEFVISNRG 271
G D + + +G A G + GG G VGDA V+ RG
Sbjct: 127 GSDPNGVGRRAPEGRAPGCARVEGGSSGTVGDATRAAVLGGRG 169
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 155 SNMEMTGFDGSATGDVNISGGEGGAVGDAQVEFVISNRGRR 277
S+ TG DG A VN+S AV DA + VI +R R
Sbjct: 169 SSSSPTGHDGGAAPAVNVSAPIAAAVADATMRAVIGDRFER 209
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 474 LATTTSHSTTPANHSGSHGVSRIKTSPSNPEARASS 367
L T+ + S NH GS G+ R+K+S S PE R S
Sbjct: 169 LNTSAAASYGGNNHYGSTGIRRLKSSSSYPELRLDS 204
>06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791
Length = 507
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -3
Query: 459 SHSTTPANHSGSHG 418
SH+ TPA+HSGSHG
Sbjct: 42 SHAPTPASHSGSHG 55
>02_02_0355 + 9312814-9313650
Length = 278
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 439 RWRCTMGGCGCKAYTQKGTLHKLVGEHNHVNRGGRRAAKQ 558
RWR GG GC A GT + GE GGRR ++
Sbjct: 216 RWRRGRGG-GCDAGGGDGTAGRCAGEAAQAAGGGRRRGRE 254
>07_03_0565 - 19561078-19561425,19562253-19563746
Length = 613
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 587 DARAFIMGLDCFAARLPPRLTWL 519
DA A+ GL+ +ARL PR TWL
Sbjct: 274 DAAAYRPGLNISSARLVPRTTWL 296
>04_03_0520 -
16748646-16748741,16748821-16748895,16749260-16749362,
16749635-16749783,16750986-16751110,16751320-16751389
Length = 205
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 33 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 131
Q K+ + LP + SL + G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202
>11_04_0273 + 15643469-15643654,15644882-15644914,15645688-15645735
Length = 88
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 209 SGGEGGAVGDAQVEFVISNRG 271
SGGEGG VGD ++++ +RG
Sbjct: 54 SGGEGGEVGDGNMKWIGHDRG 74
>08_02_0841 - 21749599-21749978,21750409-21753367
Length = 1112
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -2
Query: 280 VPSTAIRNHELNLCIADCSTFTS--RNINI-SSCRAIKTSHFHIRIVLSVISFVIVRAIF 110
V S + N +LCI+ C T S + N+ C K H H++I + VI + V A+
Sbjct: 713 VSSPSSFNGNPDLCIS-CHTNGSYCKGSNVLKPCGETKKLHKHVKIAVIVIGSLFVGAVS 771
Query: 109 IVIPHTLINKLW 74
I+I ++ K +
Sbjct: 772 ILILSCILLKFY 783
>03_01_0320 - 2510907-2512190
Length = 427
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 418 TMRSGVVRWRCTMGGCGCKAYTQKGTLHKLVGEHNHVNRGGRRAAK 555
++ S V W C+ G C Q+G +HKL+ V G R A K
Sbjct: 150 SLDSTVRAWDCSTGQCVRVEEMQEGEVHKLIAMGPWVLAGVRGAVK 195
>12_01_0694 - 5923836-5924450
Length = 204
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 415 HTMRSGVVRWRCTMGGCGCKAYTQKGTLHKLVGEHNHVNRGGRRAAKQ 558
H + RWR G GC A GT + GE GGRR K+
Sbjct: 141 HRAKRRAGRWR----GGGCDAGGGDGTAGRRSGEEGEAAGGGRRGGKR 184
>11_04_0250 + 15335457-15335882
Length = 141
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -2
Query: 496 RYPSVCRPCNHNLP*YNASEPLRISWCEPHKNFALEPRGAGVLRGP 359
R P + P ++ + P W EPH +++P +L GP
Sbjct: 87 RRPPIPSPSSYRCGFSHKGYPFYCPWAEPHSEHSVQPIVTLILHGP 132
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 173 GFDGSATGDVNISGGEGGAVGDAQVEFV-ISNRGR 274
GFDG+ G GG GG VG Q F+ I+N GR
Sbjct: 4 GFDGTENG----GGGGGGGVGKEQDRFLPIANIGR 34
>03_05_1157 + 30816143-30816359,30817005-30817120
Length = 110
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 109 IVIPHTLINKLWFHFGSDSIVLIFVW 32
++IPH +NK FH S +++LIF+W
Sbjct: 85 LIIPHDTLNKGKFHKRS-NLLLIFLW 109
>10_08_0182 + 15513693-15515273
Length = 526
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 492 TLLCVGLATTTSHSTTPANHSG 427
T+ +GLA H TTP NH+G
Sbjct: 385 TVFMLGLAAPYHHWTTPGNHTG 406
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 543 TCGETIQSHDKCSCVITSHAVTAVQNTTFGH**FRSKRLDG 665
TC E ++H + +CV + V N+T G+ +R K +DG
Sbjct: 408 TCQEAQKNHSRYACVSANSTCLGV-NSTDGYVGYRCKCMDG 447
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 558 LFRRTSAPTIDVVVFANQLVQGTLLCVGLATTTSHSTTPANHSGSHGVSRIKTSP 394
L + T+AP VV + T V L +TSH + P++ + HGVS +P
Sbjct: 130 LEKLTAAPLPSVVSPLSPSAPNT--AVALTVSTSHGSVPSSLNEGHGVSSKIAAP 182
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 121 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 29
R + +P TL+++LW HF + +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,169,330
Number of Sequences: 37544
Number of extensions: 524579
Number of successful extensions: 1972
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -