Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A17
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.3  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   7.6  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 408  MYLVADRRSVYTNKR*VYFK*FRTHTVF*IQDIFFWCKFNYNMLICIFL*NAR*FN 241
            +Y +    S+Y   R +    F T TV+    ++FW    + ++IC F+ N   F+
Sbjct: 1411 LYSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTM-FALVICPFIYNPHQFS 1465


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 475 RCLYRCSWSPL*ADILISDHLLYVS 401
           R L    W+P+ A+ +I  HLLY++
Sbjct: 204 RSLALSGWNPVPAEFVIQGHLLYLT 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,779
Number of Sequences: 5004
Number of extensions: 61023
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)