Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A16
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    77   4e-15
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    30   0.35 
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    29   1.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   5.7  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   7.6  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 13/228 (5%)
 Frame = +2

Query: 155 ELDLSNTGSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 334
           +LDL   GS VWLVK+PK++ +KW   P + +   L   RV     ++QL L  +     
Sbjct: 22  DLDLGQIGSRVWLVKIPKFLMDKWNSIPED-DAANLGCVRVKND--EIQLLLQNS----- 73

Query: 335 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECRP-- 508
            P    +PK + L V N   ++  VF     + T S +  T    + G +  +    P  
Sbjct: 74  -PENADVPKIYNLRVMNKFVRNSYVFRE---SETSSSMKSTA---LVGTVAHECNVSPVI 126

Query: 509 NDDVTYYKLKSESIKKASMPQRQVQQLD----------RIVQNFKPVSDHPHNIDYQERK 658
           NDD  Y ++  +    AS P+R+VQ +D           +    +  +    N+   + +
Sbjct: 127 NDD--YRRVMQKRALAASAPKRKVQMIDDRGGSLLAPGTLGSRSRSTTSFIRNV---KPR 181

Query: 659 KAEG-KKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI 799
             EG K +R  +  +L++LF  FE ++Y+ +K L +   QP VYLKE+
Sbjct: 182 TGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEV 229


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = +2

Query: 410 FSHIAPTNTDSVVPETENLYMEGRIVQK-LECRPNDDVTYYKLKSESIK-------KASM 565
           FS ++ T+T  VVP    L+     +QK +EC P+  V Y++ + E ++       + S 
Sbjct: 29  FSRLSETSTPGVVPSVSTLWRLLFELQKMIECEPS-CVEYFRQRKEELESHVDSEIETSK 87

Query: 566 PQRQVQQLDRIVQNFK 613
            +  V +++  V+ FK
Sbjct: 88  DESSVNKVEEKVEEFK 103


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 56  SXKAIFPPFVLXKAVKIVSALXCXSLXSSTTMPELDLSNTGSGVWLVKVPKYIA 217
           S  ++   FVL     +  A       +  T P +DLSN  S   LVK+P Y+A
Sbjct: 293 SSASVLADFVLSSCALVSGATGLLQGLTRITFPYIDLSNVES---LVKLPGYLA 343


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 479 RIVQKLECRPNDDVTYYKLKSESIKKASMPQRQVQQLD 592
           R  Q+ +  PN   T  K+KSE ++   M Q++ +QLD
Sbjct: 558 RTTQQPKSTPNH--TNIKVKSERLQHVRMAQQKAEQLD 593


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 240 PGAFSHLFAIYLGTFTNHTPLPVFDKSNSGIVVEXKSDXQ 121
           P  F+ L AIY GT+  + P+      + G+ +  +S  Q
Sbjct: 234 PQGFARLSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQ 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,638
Number of Sequences: 5004
Number of extensions: 67075
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)