Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A16
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0869 - 32591669-32591794,32591923-32592075,32592293-325923... 52 6e-07
05_06_0030 - 25060711-25060830,25060981-25061130,25061473-250615... 49 4e-06
01_01_0319 - 2574583-2574675,2575853-2576055,2576140-2576364,257... 31 1.1
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 30 2.6
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216... 29 6.0
>01_06_0869 -
32591669-32591794,32591923-32592075,32592293-32592367,
32592467-32592597,32593788-32593896,32594745-32594936
Length = 261
Score = 52.0 bits (119), Expect = 6e-07
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 16/230 (6%)
Frame = +2
Query: 158 LDLSNTGSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK- 334
L+ + VWL+K P ++ W++A G + + + V K
Sbjct: 8 LETARADRSVWLMKCPTVVSRAWQEAATAAASSSSSSDAAAGANSNSNANPNPVVAKFKM 67
Query: 335 ---DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKLECR 505
G + PK + SL +F P S + + L EG++ K +
Sbjct: 68 EMAQTGNGNTPKSY----------SLNMFKDFVPMCVFSESNQGK-LSCEGKVGHKFDME 116
Query: 506 PNDD--VTYYKLKSESIKKASMPQRQVQQL-DRIVQNFKPV-------SDHPHNIDYQER 655
P+ D V Y KL E +K+ + R++ L + + +P+ S P + +
Sbjct: 117 PHSDNLVNYGKLCRERTQKSMIKNRKLMVLANDNGMSMRPLPGLVGLMSSGPKQKEKKPL 176
Query: 656 --KKAEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI 799
K ++ K+ R D+ + N+LF FE+ +++K+L + T QP +LKEI
Sbjct: 177 PVKPSDMKRTRRDRRELENILFKLFERQPNWSLKNLMQETDQPEQFLKEI 226
>05_06_0030 -
25060711-25060830,25060981-25061130,25061473-25061544,
25061631-25061761,25062487-25062635,25062998-25063239
Length = 287
Score = 49.2 bits (112), Expect = 4e-06
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Frame = +2
Query: 464 LYMEGRIVQKLECRPNDD--VTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHN 637
L EG++ K + +P+ D V Y KL E +K+ + R+VQ ++ + P+
Sbjct: 133 LSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGL 192
Query: 638 IDY--QERKK------AEGKKARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLK 793
I +E+KK ++ K+ R D+ + N++F FE+ + +K L + T QP +LK
Sbjct: 193 IPSGSKEKKKQTPTKPSDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLK 252
Query: 794 EI 799
EI
Sbjct: 253 EI 254
>01_01_0319 -
2574583-2574675,2575853-2576055,2576140-2576364,
2576590-2576603,2577146-2577210
Length = 199
Score = 31.1 bits (67), Expect = 1.1
Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Frame = +2
Query: 230 KAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKDPGEQSIPKEHKLDVSNVNTQSLGV 409
K + GKL+IS++ T K+Q+S + L+ + H+L +S V +S V
Sbjct: 45 KRKATVTPGKLQISKIE-TPHKLQISEVQTPHKLQI---SEVETPHQLQISEVEIKSKEV 100
Query: 410 FSHIAPTNTDSVVPETENLYMEGRI-VQKLECRPNDDV-TYYKLKSESIKKASMPQRQVQ 583
+ + ++ + E ENL ++ + ++LE N + +LK++ I+ ++Q
Sbjct: 101 QALVLAQDSQRISQENENLRLQLALKTKELEHEENQKLRLQLELKNKDIESL---KKQND 157
Query: 584 QLDRIVQNFKPVSDHP 631
+L ++ +K + P
Sbjct: 158 ELKAEIEYYKKTTKPP 173
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/82 (20%), Positives = 37/82 (45%)
Frame = +2
Query: 20 VAVASQFSXLSFSXKAIFPPFVLXKAVKIVSALXCXSLXSSTTMPELDLSNTGSGVWLVK 199
V +FS + + +A+ V+ + I+S + + ++ E+ + VW K
Sbjct: 618 VHAEEEFSNVDIAAEALSTA-VIEDFLPIISRVKSVMSSNGSSKGEISYAKEHESVWF-K 675
Query: 200 VPKYIANKWEKAPGNIEVGKLK 265
++ N W PG +++ +LK
Sbjct: 676 GRRFTPNVWANTPGELQIKQLK 697
>08_02_1152 +
24720397-24720636,24720739-24720951,24721617-24721697,
24721781-24721867,24721970-24722065,24722179-24722232,
24722326-24723375,24723468-24723507,24723551-24723756
Length = 688
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 542 ESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKA 664
E ++ + P L + + K V +HPH+I Y+ +K+
Sbjct: 568 EMLRSQATPTEATSALQTLFKIIKNVIEHPHDIKYRRLRKS 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,285,033
Number of Sequences: 37544
Number of extensions: 400938
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -