Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A16
(835 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59745-1|CAA42419.1| 249|Homo sapiens RAP30 protein. 198 2e-50
X16901-1|CAA34775.1| 249|Homo sapiens 30kb subunit of RAB30 /74... 198 2e-50
BT019525-1|AAV38332.1| 249|Homo sapiens general transcription f... 198 2e-50
BC001771-1|AAH01771.1| 249|Homo sapiens general transcription f... 198 2e-50
AL138963-1|CAH72032.1| 249|Homo sapiens general transcription f... 198 2e-50
AL138693-1|CAH72459.1| 249|Homo sapiens general transcription f... 198 2e-50
AB002330-1|BAA20790.1| 1028|Homo sapiens KIAA0332 protein. 31 6.8
>X59745-1|CAA42419.1| 249|Homo sapiens RAP30 protein.
Length = 249
Score = 198 bits (484), Expect = 2e-50
Identities = 107/224 (47%), Positives = 150/224 (66%), Gaps = 7/224 (3%)
Frame = +2
Query: 155 ELDLSNT--GSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 328
ELDL+ +GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 329 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 496
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 673
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 674 KARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT QP+VYLKEI K
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILK 218
>X16901-1|CAA34775.1| 249|Homo sapiens 30kb subunit of RAB30 /74
protein.
Length = 249
Score = 198 bits (484), Expect = 2e-50
Identities = 107/224 (47%), Positives = 150/224 (66%), Gaps = 7/224 (3%)
Frame = +2
Query: 155 ELDLSNT--GSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 328
ELDL+ +GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 329 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 496
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 673
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 674 KARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT QP+VYLKEI K
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILK 218
>BT019525-1|AAV38332.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 198 bits (484), Expect = 2e-50
Identities = 107/224 (47%), Positives = 150/224 (66%), Gaps = 7/224 (3%)
Frame = +2
Query: 155 ELDLSNT--GSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 328
ELDL+ +GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 329 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 496
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 673
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 674 KARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT QP+VYLKEI K
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILK 218
>BC001771-1|AAH01771.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 198 bits (484), Expect = 2e-50
Identities = 107/224 (47%), Positives = 150/224 (66%), Gaps = 7/224 (3%)
Frame = +2
Query: 155 ELDLSNT--GSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 328
ELDL+ +GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 329 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 496
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 673
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 674 KARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT QP+VYLKEI K
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILK 218
>AL138963-1|CAH72032.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 198 bits (484), Expect = 2e-50
Identities = 107/224 (47%), Positives = 150/224 (66%), Gaps = 7/224 (3%)
Frame = +2
Query: 155 ELDLSNT--GSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 328
ELDL+ +GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 329 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 496
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 673
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 674 KARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT QP+VYLKEI K
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILK 218
>AL138693-1|CAH72459.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 198 bits (484), Expect = 2e-50
Identities = 107/224 (47%), Positives = 150/224 (66%), Gaps = 7/224 (3%)
Frame = +2
Query: 155 ELDLSNT--GSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 328
ELDL+ +GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 329 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTNTDSVVPETENLYMEGRIVQKL 496
+ D P S P+EH + +V Q+L VF T+S ++ L +EG +VQ+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVF-------TES---SSDKLSLEGIVVQRA 114
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQ-NFKPVSDHPHNIDYQERKKAEGK 673
ECRP Y +LK I+++S P R QQLD++V N+KPV++H +NI+Y+ +KK +GK
Sbjct: 115 ECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGK 174
Query: 674 KARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
+AR DK+ VL+MLF+AFEKHQYYN+KDL IT QP+VYLKEI K
Sbjct: 175 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILK 218
>AB002330-1|BAA20790.1| 1028|Homo sapiens KIAA0332 protein.
Length = 1028
Score = 30.7 bits (66), Expect = 6.8
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 197 KVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKDPGEQSIPKEHKLD 376
K P + EK N+E+ K ++ ++ R + + + + P S + +D
Sbjct: 187 KKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGR-LSRFEPPQSDSDGQRRSMD 245
Query: 377 VSNVNTQSLGVFSHIAPTNTDSVVPETENLYM 472
+ +S GV AP + D P T NLY+
Sbjct: 246 APSRRNRSSGVLDDYAPGSHDVGDPSTTNLYL 277
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,501,338
Number of Sequences: 237096
Number of extensions: 2407161
Number of successful extensions: 4730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4718
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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