Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A16
(835 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U25188-1|AAA86888.1| 277|Drosophila melanogaster initiation fac... 312 5e-85
AY071514-1|AAL49136.1| 277|Drosophila melanogaster RE56801p pro... 312 5e-85
AE014297-1190|AAF54548.1| 277|Drosophila melanogaster CG6538-PA... 312 5e-85
U02461-1|AAA81888.1| 276|Drosophila melanogaster dTFIIF30 protein. 289 2e-78
AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA... 33 0.48
AY069850-1|AAL39995.1| 755|Drosophila melanogaster SD09792p pro... 29 7.8
AE014297-3575|AAN14003.1| 755|Drosophila melanogaster CG13624-P... 29 7.8
AE014297-3574|AAN14002.1| 755|Drosophila melanogaster CG13624-P... 29 7.8
AE014297-3573|AAN14001.1| 755|Drosophila melanogaster CG13624-P... 29 7.8
AE014297-3572|AAF56314.2| 755|Drosophila melanogaster CG13624-P... 29 7.8
>U25188-1|AAA86888.1| 277|Drosophila melanogaster initiation factor
TFIIF smallsubunit protein.
Length = 277
Score = 312 bits (765), Expect = 5e-85
Identities = 155/223 (69%), Positives = 179/223 (80%), Gaps = 6/223 (2%)
Frame = +2
Query: 155 ELDLSNTGSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 334
+LDLSN G GVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 335 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTN------TDSVVPETENLYMEGRIVQKL 496
DP E+ IP EH LDVS V Q+LGVFSH+AP++ T + P+ E LYMEGRIVQKL
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKK 676
ECRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKK
Sbjct: 133 ECRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKK 192
Query: 677 ARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
ARDDK AV++MLF AFEKHQYYNIKDL KIT QPI YLKEI K
Sbjct: 193 ARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 235
>AY071514-1|AAL49136.1| 277|Drosophila melanogaster RE56801p
protein.
Length = 277
Score = 312 bits (765), Expect = 5e-85
Identities = 155/223 (69%), Positives = 179/223 (80%), Gaps = 6/223 (2%)
Frame = +2
Query: 155 ELDLSNTGSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 334
+LDLSN G GVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 335 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTN------TDSVVPETENLYMEGRIVQKL 496
DP E+ IP EH LDVS V Q+LGVFSH+AP++ T + P+ E LYMEGRIVQKL
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKK 676
ECRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKK
Sbjct: 133 ECRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKK 192
Query: 677 ARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
ARDDK AV++MLF AFEKHQYYNIKDL KIT QPI YLKEI K
Sbjct: 193 ARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 235
>AE014297-1190|AAF54548.1| 277|Drosophila melanogaster CG6538-PA
protein.
Length = 277
Score = 312 bits (765), Expect = 5e-85
Identities = 155/223 (69%), Positives = 179/223 (80%), Gaps = 6/223 (2%)
Frame = +2
Query: 155 ELDLSNTGSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 334
+LDLSN G GVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 335 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIAPTN------TDSVVPETENLYMEGRIVQKL 496
DP E+ IP EH LDVS V Q+LGVFSH+AP++ T + P+ E LYMEGRIVQKL
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIVQKL 132
Query: 497 ECRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKK 676
ECRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKK
Sbjct: 133 ECRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKK 192
Query: 677 ARDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
ARDDK AV++MLF AFEKHQYYNIKDL KIT QPI YLKEI K
Sbjct: 193 ARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 235
>U02461-1|AAA81888.1| 276|Drosophila melanogaster dTFIIF30 protein.
Length = 276
Score = 289 bits (710), Expect = 2e-78
Identities = 149/222 (67%), Positives = 172/222 (77%), Gaps = 5/222 (2%)
Frame = +2
Query: 155 ELDLSNTGSGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 334
+LDLSN G GVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L
Sbjct: 15 DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73
Query: 335 DPGEQSIPKEHKLDVSNVNTQSLGVF-SHIAPTNTDSVVP----ETENLYMEGRIVQKLE 499
DP E+ IP EH LDVS V Q+LG + P + +P + E LYMEGRIVQKLE
Sbjct: 74 DP-EEKIPTEHILDVSQVTKQTLGYSRTWHRPMARRTRLPRRHSDNEKLYMEGRIVQKLE 132
Query: 500 CRPNDDVTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNIDYQERKKAEGKKA 679
CRP D Y KLK ESI+KAS PQR+VQ +D+IVQNFKPV DH HNI+Y+ERKKAEGKKA
Sbjct: 133 CRPIADNCYMKLKLESIRKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKA 192
Query: 680 RDDKEAVLNMLFAAFEKHQYYNIKDLXKITXQPIVYLKEI*K 805
RDDK AV++MLF AFEKHQYYNIKDL KIT QPI YLKEI K
Sbjct: 193 RDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILK 234
>AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA
protein.
Length = 505
Score = 33.1 bits (72), Expect = 0.48
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +2
Query: 347 QSIPKEHKLDVSNVNTQSLGV---FSHIAPTNTDSVVPETENLYMEGRIVQKLECRPNDD 517
+S P E K+D+S T S GV + PT + + + E + ++LE +
Sbjct: 30 ESSPSESKMDISETPTDSTGVSPLADDVLPTAPEKNILKLEQA-KQDHDKEELEFKTTSA 88
Query: 518 VTYYKLKSESIKKASMPQRQVQQLDRIVQNFKPVSDHPHNID 643
+ L+ E + +MPQR ++R + N P+ P N D
Sbjct: 89 LDNRILRPELLPMEAMPQRH-NIIERTLANSHPLMS-PTNTD 128
>AY069850-1|AAL39995.1| 755|Drosophila melanogaster SD09792p
protein.
Length = 755
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +2
Query: 572 RQVQQLDRIVQNFKPVSDHPHNIDYQERK-------KAEGKKARDDKEAVLNMLFAAFEK 730
+++ +L R + + PVS+ P N+ + RK +A K + EA LF +
Sbjct: 676 KELDKLSRTINDMTPVSELPFNVRPKSRKEKNKLASRACRLKKKAQHEANKIKLFGLEIE 735
Query: 731 HQYYNIKDLXKITXQPIVYL 790
H +N+K + +I+ P +++
Sbjct: 736 HSEFNVKAV-EISYNPSIFV 754
>AE014297-3575|AAN14003.1| 755|Drosophila melanogaster CG13624-PD,
isoform D protein.
Length = 755
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +2
Query: 572 RQVQQLDRIVQNFKPVSDHPHNIDYQERK-------KAEGKKARDDKEAVLNMLFAAFEK 730
+++ +L R + + PVS+ P N+ + RK +A K + EA LF +
Sbjct: 676 KELDKLSRTINDMTPVSELPFNVRPKSRKEKNKLASRACRLKKKAQHEANKIKLFGLEIE 735
Query: 731 HQYYNIKDLXKITXQPIVYL 790
H +N+K + +I+ P +++
Sbjct: 736 HSEFNVKAV-EISYNPSIFV 754
>AE014297-3574|AAN14002.1| 755|Drosophila melanogaster CG13624-PC,
isoform C protein.
Length = 755
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +2
Query: 572 RQVQQLDRIVQNFKPVSDHPHNIDYQERK-------KAEGKKARDDKEAVLNMLFAAFEK 730
+++ +L R + + PVS+ P N+ + RK +A K + EA LF +
Sbjct: 676 KELDKLSRTINDMTPVSELPFNVRPKSRKEKNKLASRACRLKKKAQHEANKIKLFGLEIE 735
Query: 731 HQYYNIKDLXKITXQPIVYL 790
H +N+K + +I+ P +++
Sbjct: 736 HSEFNVKAV-EISYNPSIFV 754
>AE014297-3573|AAN14001.1| 755|Drosophila melanogaster CG13624-PB,
isoform B protein.
Length = 755
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +2
Query: 572 RQVQQLDRIVQNFKPVSDHPHNIDYQERK-------KAEGKKARDDKEAVLNMLFAAFEK 730
+++ +L R + + PVS+ P N+ + RK +A K + EA LF +
Sbjct: 676 KELDKLSRTINDMTPVSELPFNVRPKSRKEKNKLASRACRLKKKAQHEANKIKLFGLEIE 735
Query: 731 HQYYNIKDLXKITXQPIVYL 790
H +N+K + +I+ P +++
Sbjct: 736 HSEFNVKAV-EISYNPSIFV 754
>AE014297-3572|AAF56314.2| 755|Drosophila melanogaster CG13624-PA,
isoform A protein.
Length = 755
Score = 29.1 bits (62), Expect = 7.8
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +2
Query: 572 RQVQQLDRIVQNFKPVSDHPHNIDYQERK-------KAEGKKARDDKEAVLNMLFAAFEK 730
+++ +L R + + PVS+ P N+ + RK +A K + EA LF +
Sbjct: 676 KELDKLSRTINDMTPVSELPFNVRPKSRKEKNKLASRACRLKKKAQHEANKIKLFGLEIE 735
Query: 731 HQYYNIKDLXKITXQPIVYL 790
H +N+K + +I+ P +++
Sbjct: 736 HSEFNVKAV-EISYNPSIFV 754
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,480,467
Number of Sequences: 53049
Number of extensions: 695009
Number of successful extensions: 1817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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