Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A10
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar... 92 8e-20
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.35
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 29 0.61
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.61
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 3.2
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 4.3
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 4.3
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 4.3
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 26 7.5
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 26 7.5
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 26 7.5
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 7.5
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 9.9
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 9.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.9
>SPBC1709.16c |||aromatic ring-opening dioxygenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 285
Score = 92.3 bits (219), Expect = 8e-20
Identities = 49/138 (35%), Positives = 84/138 (60%), Gaps = 4/138 (2%)
Frame = +2
Query: 347 KAIILVTAHWEE--DVVTISSGKHHDLYFDYYGFPPESYKYRYDAPGNPELANRIHEKLK 520
K II+ +AH+E V S + L++DYYGFP Y+ ++ + G+ +A++I LK
Sbjct: 62 KGIIVFSAHYESRGSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALK 121
Query: 521 NSGIDSK-LDPKRGWDHGVFVPMLLINP-AADIPIVQISVLNSQDPKKHYELGEALQEFR 694
I +K + RG DHGVFVP ++ P +IP++++S +++ DP + Y++G+ALQ R
Sbjct: 122 EYQIPAKTVSGDRGLDHGVFVPFKIMFPDGLNIPLIEVS-MHTLDPMQLYKVGQALQSLR 180
Query: 695 KEGIAILGSGMSYHNMRE 748
KE + + G G++ H +
Sbjct: 181 KEYLIVSG-GLNIHTFED 197
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 374 WEEDVVTISSGKHHDLYFDYYGFPPES-YKYRYDAP--GNPELA 496
W+ + + S GK++ Y+ PP S KY +D P N E+A
Sbjct: 2377 WQVNPIDASEGKNNTALLKYHDIPPHSEVKYSWDYPCCANKEIA 2420
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.61
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 381 KTSLPFHPVNTTIYTLTTTASPLNHTNTDTTRQGILNWPI--EYTKNLKTPV*TLN*IQN 554
+TS H ++ L T +S LNH+N RQ I N+ + + +K +TP LN N
Sbjct: 103 QTSPYTHHNAEPLHDLQTFSSNLNHSN--NRRQTICNFNMANDASKENETPYMVLNNKFN 160
Query: 555 EVGTTEFS 578
V TTE++
Sbjct: 161 PVLTTEYT 168
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 402 PVNTTIYTLTTTASPLNHTNTDTT 473
P T++ T TTTA P H N+ TT
Sbjct: 97 PPTTSLNTTTTTAPPTTHVNSTTT 120
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 497 NRIHEKLKNSGIDSKLDPKRGWDHGVFVPMLLINP 601
++I EK+++ G D+ + +HGV LL++P
Sbjct: 54 DQIAEKIEDCGFDASVISSTEGEHGVMANYLLLSP 88
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 596 NPAADIPIVQISVLNSQDPK 655
NPA D+ + I LN DPK
Sbjct: 406 NPANDVQYISIKALNEYDPK 425
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 405 VNTTIYTLTTTASPLNHTNTDTTRQGILN-WPI 500
+NT +Y LTT A+ N T T ++N +PI
Sbjct: 57 LNTALYGLTTFAAQFNSTTMSPTTSHLVNAYPI 89
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 590 LINPAADIPIVQISVLNSQDPKKHYELGEALQEFRK 697
++ A PI+Q+S L + DP K +++ + R+
Sbjct: 145 IVYAADSAPIIQVSTLETTDPNKLWKVSSKQYDLRE 180
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 278 KEHAGLTVFLRDEVKKHVNLKELKAIIL 361
+E L VFLR+ +K +N +E+KAI++
Sbjct: 39 RECLPLIVFLRNRLKYALNGREVKAILM 66
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 278 KEHAGLTVFLRDEVKKHVNLKELKAIIL 361
+E L VFLR+ +K +N +E+KAI++
Sbjct: 39 RECLPLIVFLRNRLKYALNGREVKAILM 66
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 278 KEHAGLTVFLRDEVKKHVNLKELKAIIL 361
+E L VFLR+ +K +N +E+KAI++
Sbjct: 39 RECLPLIVFLRNRLKYALNGREVKAILM 66
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +2
Query: 434 YGFPPESYKYRYDAPGNPELANRIHEKLKNSGIDSKLDPKRGWDHGVFV 580
Y PE + Y G LAN + K +G+ +K +P D V
Sbjct: 227 YEQDPEGFVNPYSKRGAAALANSENNKGSEAGVSAKTNPDMDSDSSAIV 275
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 390 LPFHPVNTTIYTLTTTASPLNHTNTD 467
LPF +NT + T TT A +N TD
Sbjct: 297 LPFSEINTQLSTSTTHALMVNILGTD 322
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 278 KEHAGLTVFLRDEVKKHVNLKELKAII 358
K+ G TV + + VKK + LKE K++I
Sbjct: 674 KQSKGSTVAVEEVVKKLLKLKESKSLI 700
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 9.9
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 575 KLRGPNLVLDLI*SLYRSF*VFRVFYW--PIQDSLARRICICMIQGGSRSSQ 426
KL L L S+Y SF RV +W PI R I + +I G S S+Q
Sbjct: 435 KLLEDQTYLHLFGSIYNSFREERVMFWIFPIAVQFMRGITVGVI-GSSGSAQ 485
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,615
Number of Sequences: 5004
Number of extensions: 70298
Number of successful extensions: 216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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