Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A10
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1543 - 38138253-38138855,38139000-38139239                      111   7e-25
01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684     91   7e-19
12_01_0539 - 4245733-4246149,4246406-4246519                           31   1.5  
07_03_0454 + 18364654-18366594                                         23   6.7  

>01_06_1543 - 38138253-38138855,38139000-38139239
          Length = 280

 Score =  111 bits (267), Expect = 7e-25
 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
 Frame = +2

Query: 347 KAIILVTAHWEEDVVTIS--SGKHHDLY-FDYYGFPPESYKYRYDAPGNPELANRIHEKL 517
           +AI++V+ HWE    T++   G +  ++ F+ YGFP   ++  Y APG P++A +  E L
Sbjct: 40  RAILIVSGHWETATPTVNVVRGNNDTIHDFEGYGFPKSMFQLEYPAPGAPDVAKKAKELL 99

Query: 518 KNSGIDS-KLDPKRGWDHGVFVPMLLINPAADIPIVQISVLNSQDPKKHYELGEALQEFR 694
           + +G    K D  RG DHG +VP++ + P A++P+ Q+S+   +D   HY+LG AL   R
Sbjct: 100 EQAGFGPVKEDHGRGLDHGAWVPLMFMYPEANVPVCQLSLQTGRDGAYHYDLGRALAPLR 159

Query: 695 KEGIAILGSGMSYHNM 742
            +G+ ILGSG + HN+
Sbjct: 160 DDGVLILGSGNATHNL 175


>01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684
          Length = 335

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
 Frame = +2

Query: 443 PPESYKYRYDAPGNPELANRIHEKLKNSGIDS-KLDPKRGWDHGVFVPMLLINPAADIPI 619
           PP+  KY   APG P+LA +  E L+ +G    K +  RG DHG +VP++ + P A++P+
Sbjct: 144 PPDMLKY--PAPGAPDLAMKTKELLEQAGFGPVKENHSRGLDHGAWVPLMFMYPEANVPV 201

Query: 620 VQISVLNSQDPKKHYELGEALQEFRKEGIAILGSGMSYHNMR 745
            Q+S+ + +D   HYELG AL   R +G+ +LGSG + HN+R
Sbjct: 202 CQLSLQSGRDGAYHYELGRALAPLRDDGVLVLGSGSATHNLR 243



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
 Frame = +2

Query: 236 FVNHGGGPLPLLGDKEHAGLTVFLRDEVKKHVNLKEL-KAIILVTAHWEEDVVTISSGK- 409
           F++HG    P L   +      F +  +   V   EL +AI++V+ HWE    T++  + 
Sbjct: 5   FLSHGA---PTLSIDDTIAAQGFFKSWLPAAVAGAELPRAILVVSGHWEAAAPTVNVIRG 61

Query: 410 HHDLYFDYYGFPPESYKYRYDAPGNPELA-NRIHEKLKNSGIDSKLDPKRGWDHGVFVPM 586
           ++D   D+YGFP   YK  ++      L   + H  +  +   +  +  R   HG  +P 
Sbjct: 62  NNDTIHDFYGFPKAMYKNIWEEIDLSALVIGKPHYMVAETWFGNWSEFTRRQHHGSMIPF 121

Query: 587 L 589
           L
Sbjct: 122 L 122


>12_01_0539 - 4245733-4246149,4246406-4246519
          Length = 176

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 563 DHGVFVPMLLINPAADIPIVQISVLNSQDPKKHYELGEALQ 685
           +HG  V +    P AD  + +I+ +  Q+P  H E  +AL+
Sbjct: 135 EHGTLVAIYHSQPTADYAVWKIAPVGHQEPHSHSESDDALE 175


>07_03_0454 + 18364654-18366594
          Length = 646

 Score = 23.4 bits (48), Expect(2) = 6.7
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +2

Query: 149 IVFMSILSMNILKYFTGTLRTMATVAPALFVNHGGGPLPLLGDKEHAGLTVFLRDEV 319
           IV  ++ ++NIL      L+ ++   P     +G   LP +   +H G   F+ D +
Sbjct: 471 IVHGNVSTVNILLDDLSVLKVISRNYPVKIAGYGTSGLPDIDKAQHTGF--FMEDSL 525



 Score = 23.4 bits (48), Expect(2) = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 365 TAHWEEDVVTISSGKHHDLY 424
           T  + ED +  S GK HD+Y
Sbjct: 517 TGFFMEDSLVTSHGKEHDVY 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,927,405
Number of Sequences: 37544
Number of extensions: 449941
Number of successful extensions: 1301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)