Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A10
(825 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016448-4|AAY86192.1| 91|Caenorhabditis elegans Hypothetical ... 29 3.1
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 29 4.0
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 5.3
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 5.3
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 5.3
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ... 29 5.3
U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical ... 28 7.1
Z74474-2|CAA98955.1| 425|Caenorhabditis elegans Hypothetical pr... 28 9.3
AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical ... 28 9.3
>AF016448-4|AAY86192.1| 91|Caenorhabditis elegans Hypothetical
protein F41E6.15 protein.
Length = 91
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 386 VVTISSGKHHDLYFDYYGFPPESYKYRY 469
V+ + ++++LY+ YY + P SY Y Y
Sbjct: 28 VIPKAEAQYYNLYYPYYSYYPYSYYYYY 55
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 384 TSLPFHPVNTTIYTL-TTTASPLNHTNTDT 470
T++P + TT+ T TTT SPLN T T T
Sbjct: 227 TTVPLNGTTTTVPTNETTTTSPLNGTTTTT 256
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 390 LPFHPVNTTIYTLTTTASPLNHTNTDTTRQG 482
+P TT T TTT SP+N T T G
Sbjct: 184 VPLTTTTTTTTTTTTTTSPMNTTTTTVLING 214
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 384 TSLPFHPVNTTIYTLTTTASPLNHTNTDTTRQGILNWPIEYTKNLKTP 527
T+ P P TT TTT++ T T TT Q P+ T + TP
Sbjct: 673 TTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 720
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 384 TSLPFHPVNTTIYTLTTTASPLNHTNTDTTRQGILNWPIEYTKNLKTP 527
T+ P P TT TTT++ T T TT Q P+ T + TP
Sbjct: 729 TTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 776
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 384 TSLPFHPVNTTIYTLTTTASPLNHTNTDTTRQGILNWPIEYTKNLKTP 527
T+ P P TT TTT++ T T TT Q P+ T + TP
Sbjct: 552 TTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 599
>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
protein BE0003N10.3 protein.
Length = 1145
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 278 KEHAGLTVFLRDEVKKHVNLKELKAIILVTAHWEEDVVTISSGKHHD 418
K GL++F R K HVN + I+ + +E+ + ++ G HD
Sbjct: 170 KNPGGLSIFHRSLQKIHVNYRVFHGILQKSMKKKEENILVTLGVGHD 216
>U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical
protein C04E7.3 protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 584 MLLINPAADIPIVQISVLNSQDPKKHYELGEA 679
ML+++ + + IS L+ +P HY+ GEA
Sbjct: 419 MLIVDDQEKVKNIDISYLSKVNPSHHYQWGEA 450
>AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical
protein Y45F10D.2 protein.
Length = 179
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 375 GRKTSLPFHPVNTTIYTLTTTASPLNHTNTDTTRQ 479
G TS+P + T TTTASP++ ++ ++Q
Sbjct: 110 GSSTSMPVRQKRQAVSTTTTTASPMSTSSPTPSQQ 144
>Z74474-2|CAA98955.1| 425|Caenorhabditis elegans Hypothetical
protein K10C8.2 protein.
Length = 425
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = -3
Query: 664 IMLLWILTVQYGYLYYGNVCRGINQKHRNENSVVPTSFWI*FRVYTGVFKFFVYSIGQFR 485
I+ ++ + + C + N + V PTS + R+YT +F+ Y+I F
Sbjct: 151 IVFAFVFNASRWFELHAQPCSFGTEGQTNSSVVYPTSLMM-NRMYTLIFRNAAYTIVMFF 209
Query: 484 IPWRVVS 464
+P+ +++
Sbjct: 210 LPFAILT 216
>AL032626-2|CAA21539.1| 571|Caenorhabditis elegans Hypothetical
protein Y37D8A.2 protein.
Length = 571
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 428 DYYGFPPESYKYRYDAPGNPELANRIHEKLKN 523
D + F P +YK+R DA + L ++H++L +
Sbjct: 539 DRWNFAPVTYKWRKDAHRHYHLYQKLHKELSS 570
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,996,205
Number of Sequences: 27780
Number of extensions: 391143
Number of successful extensions: 1212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -