Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A08
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    50   1e-07
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   2.3  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   3.1  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    24   5.4  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    24   5.4  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    24   7.1  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +2

Query: 56  MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 235
           MPQNEYIE   + +GRR D+                      RGIKAK++ ++RR EKIQ
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 236 M 238
           M
Sbjct: 61  M 61


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 56  MPQNEYIERHQKL 94
           +PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 223 IAAFLIEYFSFDTAEFARLF-SAFMRLTSFTLP 128
           IAAFL  YFS   AEF   F S    LT+   P
Sbjct: 229 IAAFLSSYFSPPNAEFDSTFCSTLSSLTNSEKP 261


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 56  MPQNEYIERHQKL 94
           +PQ E++E+H+KL
Sbjct: 196 LPQTEFVEKHKKL 208


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +3

Query: 3   FFSLXVW*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRRENGSVKLVSLINALK----R 170
           +FSL  +    L   +   R+   +  +K    DG    +ENG  KL  L   +     R
Sbjct: 449 YFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIR 508

Query: 171 RANSAVSK 194
           R N  +SK
Sbjct: 509 RTNDILSK 516


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 217 AFLIEYFSFDTAEFARLFSAFMRLT 143
           AFL+EYF+    + A +F+A    T
Sbjct: 303 AFLLEYFNLSKDQQATVFAAIFEKT 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,100
Number of Sequences: 5004
Number of extensions: 11163
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)