Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A08
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...    43   5e-05
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    26   8.7  
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705...    26   8.7  

>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 24/60 (40%), Positives = 28/60 (46%)
 Frame = +2

Query: 59  PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 238
           PQ ++IE HQK +GRRLDY                     L G K K F K+R  EK QM
Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392


>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 9   SLXVW*QRKLPNKQPTCRRTNILSAIKSFTVD 104
           S  +W +++LP K P    T  L   +S  +D
Sbjct: 289 SFYIWRKKRLPTKTPLIENTEDLEDFESIFID 320


>03_02_0277 +
           7056341-7056391,7056681-7056764,7057107-7057223,
           7057335-7057772,7057889-7058295,7058371-7058470,
           7058707-7058793,7059056-7059544
          Length = 590

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 143 ELHASVFSPHNLAVYRKAFDGAQYIRSAAC 54
           EL       H LA+YRKAFD      S++C
Sbjct: 97  ELEVICLEQHLLALYRKAFDQQICSVSSSC 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,073,333
Number of Sequences: 37544
Number of extensions: 63814
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)