Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A08
(335 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 52 8e-08
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 52 8e-08
Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical pr... 29 0.83
Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical pr... 27 3.3
AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and inte... 27 3.3
AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and inte... 27 3.3
U40944-2|ABC71812.1| 306|Caenorhabditis elegans Hypothetical pr... 26 7.7
U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical pr... 26 7.7
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 52.4 bits (120), Expect = 8e-08
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +2
Query: 56 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 235
MPQNE+IE H+K +GRRLD+ LRG KAK+++K+R +EK++
Sbjct: 1 MPQNEHIELHRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGHKAKLYHKKRYSEKVE 60
Query: 236 M 238
M
Sbjct: 61 M 61
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 52.4 bits (120), Expect = 8e-08
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +2
Query: 56 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 235
MPQNE+IE H+K +GRRLD+ LRG KAK+++K+R +EK++
Sbjct: 1 MPQNEHIELHRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGHKAKLYHKKRYSEKVE 60
Query: 236 M 238
M
Sbjct: 61 M 61
>Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical
protein F41E7.3 protein.
Length = 402
Score = 29.1 bits (62), Expect = 0.83
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 214 FLIEYFSFDTAEFARLFSAFMRLTSFTLPFSLLII*PSTVKLLMALN 74
FLI + AEF +F + + F LPF L+ I S +K+ + LN
Sbjct: 190 FLICSEDWSNAEFRSIFGIVVMILQFILPFVLIAI--SYIKIWLFLN 234
>Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical
protein F13B10.1e protein.
Length = 801
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 21 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 182
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 345 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 400
>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
protein F13B10.1c protein.
Length = 1000
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 21 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 182
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 528 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 583
>Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical
protein F13B10.1a protein.
Length = 930
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 21 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 182
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 474 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 529
>AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform c protein.
Length = 984
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 21 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 182
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 528 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 583
>AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform a protein.
Length = 931
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 21 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 182
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 475 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 530
>U40944-2|ABC71812.1| 306|Caenorhabditis elegans Hypothetical
protein PDB1.1b protein.
Length = 306
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 238 HLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 140
+++L IA ++ YFS A A + +FM +TS
Sbjct: 34 NVSLIIAKSIVAYFSGSLAILASVVDSFMDITS 66
>U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical
protein PDB1.1a protein.
Length = 341
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 238 HLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 140
+++L IA ++ YFS A A + +FM +TS
Sbjct: 69 NVSLIIAKSIVAYFSGSLAILASVVDSFMDITS 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,475,681
Number of Sequences: 27780
Number of extensions: 59118
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -