Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_A07
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...   156   3e-39
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   3.9  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.2  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   6.8  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  156 bits (379), Expect = 3e-39
 Identities = 80/133 (60%), Positives = 94/133 (70%)
 Frame = +1

Query: 361 RLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPRSGLA 540
           +LSE A  P +GS  +AG DL +A +  VP RGK LV TDL I +P G YGRVAPRSGLA
Sbjct: 7   KLSEKATIPTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSGLA 66

Query: 541 LKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLS 720
            K+ ID GAGVID DYRG+V V+LFN+SD DF +K GDRIAQLI E+I  P +  V +L 
Sbjct: 67  SKHSIDTGAGVIDADYRGHVRVLLFNYSDVDFPIKVGDRIAQLILERIVNPPVILVESLE 126

Query: 721 VTQRGDGGFGSXG 759
            T RG  GFGS G
Sbjct: 127 ATVRGANGFGSTG 139


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 94  CKLLFNFRPKEINRSCYSLRTKTSNINHR 8
           CKL + F PK++ +    L T+  N ++R
Sbjct: 175 CKLAYEFFPKDLRKRLQKLETEDMNKSNR 203


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 131 LIYNNSSIFLSNIAYYRFCFDFKCLH 208
           L+  NS    S++A Y+FC DF  L+
Sbjct: 328 LLILNSHTLASSLAVYQFCLDFTRLN 353


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 109 INNQMCKLLFNFRPKEINRSCYSLRTKTSNI 17
           ++N +CK+L   +P  +    YSL +K+SN+
Sbjct: 45  LSNFLCKIL---KPTNLTPQTYSLESKSSNL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,796
Number of Sequences: 5004
Number of extensions: 51713
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)