Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_A05
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 273 1e-73
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 270 7e-73
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 145 3e-35
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 144 7e-35
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 56 1e-14
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 3.3
12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150 29 4.4
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 28 7.7
02_04_0551 + 23801464-23801802 28 7.7
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 273 bits (669), Expect = 1e-73
Identities = 133/217 (61%), Positives = 162/217 (74%), Gaps = 5/217 (2%)
Frame = +3
Query: 165 LKSSPAVLGMLTRLSRRSFATSKAL-----ASKPVTVRDALNQAIDEEMERDEKVFVLGE 329
L S P + +L RL + A + A A+K +TVR+ALN A+DEEM D VF++GE
Sbjct: 9 LGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGE 68
Query: 330 EVAQYDGAYKVTRGLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQ 509
EV +Y GAYK+++GL KYG +RV+DTPITE L+P+ EFMTFNFSMQ
Sbjct: 69 EVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQ 128
Query: 510 AIDHIINSAAKTFYMSAGTVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVLMPY 689
AIDHIINSAAK+ YMSAG + VPIVFRGPNGAA+ V AQHSQC+ AWY+H PGLKVL+PY
Sbjct: 129 AIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVPY 188
Query: 690 SAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDE 800
SAEDA+GLLKAAIRDPDPVV LE+E++YG FP+S E
Sbjct: 189 SAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAE 225
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 270 bits (663), Expect = 7e-73
Identities = 126/193 (65%), Positives = 151/193 (78%)
Frame = +3
Query: 222 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 401
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y GAYK+++GL KYG RV
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRV 72
Query: 402 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 581
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 73 LDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPI 132
Query: 582 VFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLED 761
VFRGPNGAA+ V AQHSQC+ AWY+H PGLKVL PYSAEDA+GLLKAAIRDPDPVV LE+
Sbjct: 133 VFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLEN 192
Query: 762 EIMYGIPFPMSDE 800
E++YG FP+S E
Sbjct: 193 ELLYGESFPVSAE 205
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 145 bits (352), Expect = 3e-35
Identities = 74/204 (36%), Positives = 112/204 (54%)
Frame = +3
Query: 189 GMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTR 368
G +++ + A S V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+
Sbjct: 52 GRMSKAESPASAASSKSDGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTK 111
Query: 369 GLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTF 548
GL + +GD RV+DTPI E L+P+ E M F + A + I N+
Sbjct: 112 GLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLH 171
Query: 549 YMSAGTVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAI 728
Y S G +PIV RGP G + A+HSQ +++ PGL+++ + +AKGL+KAAI
Sbjct: 172 YTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAI 231
Query: 729 RDPDPVVMLEDEIMYGIPFPMSDE 800
R +PVV+ E ++Y + + DE
Sbjct: 232 RSENPVVLFEHVLLYNLKEKIPDE 255
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 144 bits (349), Expect = 7e-35
Identities = 77/202 (38%), Positives = 112/202 (55%), Gaps = 4/202 (1%)
Frame = +3
Query: 207 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGL 374
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+GL
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGL 96
Query: 375 WKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYM 554
+ +GD RV+DTPI E L+PI E M F + A + I N+ Y
Sbjct: 97 AEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYT 156
Query: 555 SAGTVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRD 734
S G +PIV RGP G + A+HSQ +++ PGL+++ + +AKGL+KAAIR
Sbjct: 157 SGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRS 216
Query: 735 PDPVVMLEDEIMYGIPFPMSDE 800
+PVV+ E ++Y + + DE
Sbjct: 217 ENPVVLFEHVLLYNLKEKIPDE 238
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 56.4 bits (130), Expect(2) = 1e-14
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Frame = +3
Query: 240 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPIT 419
A K V + A+NQA+ ++ D + +V GE+V + G ++ T GL ++G RV +TP+
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 420 EXXXXXXXXXXXXXXLKPICEFMTFNFSMQAID---------------------HIINSA 536
E + I E ++ A D I+N A
Sbjct: 105 EQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQACLRLDQCFVPTYLYIQLLVQIVNEA 164
Query: 537 AKTFYMSAGTVPV-PIVFRGPNGAASSVAAQHSQCFGAWYSHCPGLK 674
AK Y S + R P GA HSQ A++ H PGLK
Sbjct: 165 AKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCHVPGLK 211
Score = 41.5 bits (93), Expect(2) = 1e-14
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 672 KVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMY 773
+V++P S +AKGLL A+IRDP+PVV E + +Y
Sbjct: 251 QVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLY 284
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 564 TVPVPIVFRGPNGAASSVAAQHSQCFGAWYSHCP 665
+V P++F G + A V FGAWYS P
Sbjct: 23 SVLTPLLFAGGDPRAQEVTTSSISRFGAWYSGSP 56
>12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150
Length = 57
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 266 CFKSSDRRGDGERRESLRFGRGSRSIRWCLQ 358
C K +RG G+R ESL + R + W +Q
Sbjct: 10 CAKGGHKRGLGDREESLAYTRRFLLVSWLMQ 40
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 159 MALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 311
M + PA+ L ++RRS K+LA K + R+ N + D+K
Sbjct: 177 MPHRKDPALPNTLNDINRRSQEIGKSLARKKLATREQKNPTSPDITNNDQK 227
>02_04_0551 + 23801464-23801802
Length = 112
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 591 GPNGAASSVAAQHSQCFGAW 650
G AA++VA QH+ C GAW
Sbjct: 11 GGGAAAAAVARQHAVCDGAW 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,791,177
Number of Sequences: 37544
Number of extensions: 494806
Number of successful extensions: 1330
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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