Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P24
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0188 + 6251256-6251561                                           75   3e-14
09_02_0168 - 5253588-5254688                                           69   4e-12
01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905     45   5e-05
08_02_1524 + 27657711-27657768,27658612-27658671,27658805-276588...    29   2.0  
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694...    29   3.5  

>03_02_0188 + 6251256-6251561
          Length = 101

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
 Frame = -3

Query: 479 KLLTILESKHVQVINESYMHN----VPKGA-ETHFKVVVVSEKFDGLPLIKRHRLVNELL 315
           KL + LE+  + + + SY H     V   A ETHF + V+S KF+G  L+KRHR+V +LL
Sbjct: 19  KLQSALEASALDIEDVSYQHAGHAAVKDNANETHFNIRVISPKFEGQSLVKRHRMVYDLL 78

Query: 314 AEELQNGVHALSIVAKTPKQ 255
            +EL +G+HA+SIVAKTPK+
Sbjct: 79  TDELNSGLHAISIVAKTPKE 98


>09_02_0168 - 5253588-5254688
          Length = 366

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
 Frame = -3

Query: 464 LESKHVQVINESYMHNVPKGA-----ETHFKVVVVSEKFDGLPLIKRHRLVNELLAEELQ 300
           L    +Q+ + S++H    G      ETHF V VVSE F G  L+KRHR V +LL +EL+
Sbjct: 291 LSPVQLQIEDISHLHKGHAGVSGSNGETHFNVRVVSEAFQGKSLLKRHRAVYDLLQDELK 350

Query: 299 NGVHALSIVAKTPKQ 255
           NG+HALSI AKTP +
Sbjct: 351 NGLHALSIDAKTPSE 365


>01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905
          Length = 94

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = -3

Query: 407 GAETHFKVVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHALSI-VAKTPKQ 255
           G    +++ VVSEKF+G  L++RHR+VN  LA  +   +HA+SI  A TP Q
Sbjct: 29  GCGASYEIEVVSEKFEGKRLLERHRMVNTALAPHMAE-IHAVSIKKALTPAQ 79


>08_02_1524 +
           27657711-27657768,27658612-27658671,27658805-27658890,
           27659343-27659963,27660460-27660618
          Length = 327

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -3

Query: 431 SYMHNVPKGAETHFK--VVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHALSIVAKTPK 258
           SY+  V K A+ HFK  V V S+K D   ++KR     E+    L++ +H LS   + PK
Sbjct: 196 SYIRLVKK-AKKHFKKTVKVASDKED-CKIVKRLSKAREITTSLLESTMHLLSKQIQMPK 253

Query: 257 QWEXSDQLXENSP 219
               S    + +P
Sbjct: 254 LSLISKAFQKKNP 266


>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
            24569546-24569650,24569808-24570029,24570162-24570274,
            24570371-24570470,24571125-24571325,24571401-24571549,
            24571624-24571765,24571851-24571991,24572098-24572286,
            24572622-24572835,24573198-24573291,24573671-24573905,
            24574242-24574433,24574919-24575017,24575443-24575532,
            24575709-24575912,24575994-24576269,24576974-24577096,
            24577453-24577608,24577686-24577802,24577878-24577957,
            24578173-24578377,24578485-24578687,24578882-24578933
          Length = 1350

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
 Frame = -3

Query: 524  HMSSASGIVESTIXNKLLTILESKHVQVINESYMHNVPKGAET--------HFKVVVVSE 369
            HM  ++  V+ +I N     L+S+HV+VI++S +   P G +         H K ++   
Sbjct: 1109 HMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPKV 1168

Query: 368  KFDGLPLIKR 339
               G+P ++R
Sbjct: 1169 IVKGIPTVER 1178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,739
Number of Sequences: 37544
Number of extensions: 214446
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)