Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P24
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-2|AAC24398.1|  108|Caenorhabditis elegans Hypothetical pr...   110   8e-25
Z81120-6|CAH10814.1|   98|Caenorhabditis elegans Hypothetical pr...    44   6e-05
AL132876-10|CAC48129.1|  106|Caenorhabditis elegans Hypothetical...    35   0.036
Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U88168-2|AAC24398.1|  108|Caenorhabditis elegans Hypothetical
           protein K11H12.1 protein.
          Length = 108

 Score =  110 bits (264), Expect = 8e-25
 Identities = 57/110 (51%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
 Frame = -3

Query: 521 MSSAS-GIVESTIXNKLLTILESKHVQVINESYMHNVPKGAETHFKVVVVSEKFDGLPLI 345
           MS+ S G V   +  KL    + KH++V  ES++HNVPKGAE HF+V VVS++F+G  +I
Sbjct: 1   MSTLSEGPVARLLKEKLFAAFQPKHLEVECESHLHNVPKGAEKHFRVQVVSDEFEGKRVI 60

Query: 344 KRHRLVNELLAEELQNGVHALSIVAKTPKQWEXSDQLXENSPNCRGGFGK 195
           +RHRLVN  LA+EL   VHAL I A    +W+   Q  E+SP CRGGFGK
Sbjct: 61  ERHRLVNTCLAKELATTVHALRIDAIPTSKWDGQKQ--EDSPTCRGGFGK 108


>Z81120-6|CAH10814.1|   98|Caenorhabditis elegans Hypothetical
           protein T12D8.10 protein.
          Length = 98

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 21/61 (34%), Positives = 35/61 (57%)
 Frame = -3

Query: 392 FKVVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHALSIVAKTPKQWEXSDQLXENSPNC 213
           F++++VSE F+G   ++ HRLV   LA  + +  HAL+I A TP++W         +  C
Sbjct: 35  FRLLIVSEAFEGKCTLQSHRLVQAALA-PIMDETHALTICAYTPERWSQMTTEDRQNAGC 93

Query: 212 R 210
           +
Sbjct: 94  Q 94


>AL132876-10|CAC48129.1|  106|Caenorhabditis elegans Hypothetical
           protein Y105E8A.11 protein.
          Length = 106

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 21/87 (24%), Positives = 43/87 (49%)
 Frame = -3

Query: 527 RHMSSASGIVESTIXNKLLTILESKHVQVINESYMHNVPKGAETHFKVVVVSEKFDGLPL 348
           RH +   G  + +     ++ L ++ +       +H+V  G  + F VVV +  F G   
Sbjct: 19  RHSACCGGEHKMSEAELKMSKLLTEGIDGCTRVEVHDVSNGCGSMFDVVVEAAGFKGKSK 78

Query: 347 IKRHRLVNELLAEELQNGVHALSIVAK 267
           + +H+ V  +L E++++ +H L+I  K
Sbjct: 79  VAQHKQVTSILREQIKD-MHGLTIKTK 104


>Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical
           protein B0379.4b protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 280 DSACTPF*SSSANSSLTKRCLFIRGKPSNFSETTTTLKCVSAP 408
           D+A TP  S SAN+S+ K+    R KP  ++    TL C   P
Sbjct: 174 DTASTPLNSFSANASIEKKRSTARRKP-RWARCFQTLFCCVTP 215


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 116 LDNWSRLDQLCDIKSIDDLYI 178
           LDNWS +D+L ++  ++ +Y+
Sbjct: 264 LDNWSIMDELVELPQLNSVYL 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,212
Number of Sequences: 27780
Number of extensions: 216171
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)